PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551795.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 781aa MW: 89590.2 Da PI: 7.7233

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.3	7.9e-21	60	134	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF+vr ++++s+++g++t+r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel XP_010551795.1 60 EFYTSYATRTGFKVRSGQMYRSRTDGTVTSRRFVCSKEGFQLN--------------SRTGCPAFVRVQRRDTGKWVLDQIQKEHNHEL 134 6*************************************876..............589*************************98 PP
2	FAR1	68.8	1.3e-21	221	297	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++kk+++g w v++l+++HnHel p XP_010551795.1 221 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKKQDSGGWIVDRLNKDHNHELEP 297 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-16	60	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.0E-17	221	297	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-27	393	485	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	667	703	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-8	678	705	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.2E-7	679	700	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MESADTEPAG LNCGNNMVVK AYPLGMVRIM NNNGIGEDEG DSGVEPYVGL EFDSVEEARE 60 FYTSYATRTG FKVRSGQMYR SRTDGTVTSR RFVCSKEGFQ LNSRTGCPAF VRVQRRDTGK 120 WVLDQIQKEH NHELGGQVEE TPRPPVVSQR PPAPTKLAVS VPHRPKMKVI DESDKARSCP 180 SGVISFKRFK GAGDGGDVQT QPNAAEPYAG LEFSSANEAC QFYQAYAEVV GFRVRIGQLF 240 RSKVDGSITS RRFVCSKEGF QHPSRMGCGA YMRIKKQDSG GWIVDRLNKD HNHELEPGKK 300 NAGMKKITED VTGGLDSVDL IELNDFGNHI KKTRENTIGK EWYPVLLEYF QTRQAEDTGF 360 FYAVELDSNG SCMSVFWADS RARFACSQFG DAVVFDTSYR KGNYSVPFAT FVGFNHHRQP 420 VLLGCALISD ESKEVFTWLF QTWLRAMSGH RPRSIVADQD LAIQQAVAQI FPGTHHRYSS 480 WQIRAKEREN LRAFPNEFKY EYEKCIYQTQ TTVEFDTMWN ALVNKYGLRD NMWLREMYEK 540 RENWVPAYLR GTFFGGIPIN GNVEPFFGTS LDSLTPLREF VSCYEQGLEQ RREEERKEDF 600 NSYNLQPFLQ TKEPVEEQCR RLYTLTIFRI FQNELVQSYN YLGLKTYEEG AISRFLVRKC 660 GNENEKHAVT FSATNLNVSC SCQMFEYEGL LCRHILKVFN LLDMRELPSR YILHRWTKNA 720 EFGFVRDVES GVSSQDLKAL MVWSLREAAS KYIEFGTSSL EKYKLAYEIM REGGKKLCWQ 780 R

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MESADTEPAG LNCGNNMVVK AYPLGMVRIM NNNGIGEDEG DSGVEPYVGL EFDSVEEARE  60
FYTSYATRTG FKVRSGQMYR SRTDGTVTSR RFVCSKEGFQ LNSRTGCPAF VRVQRRDTGK  120
WVLDQIQKEH NHELGGQVEE TPRPPVVSQR PPAPTKLAVS VPHRPKMKVI DESDKARSCP  180
SGVISFKRFK GAGDGGDVQT QPNAAEPYAG LEFSSANEAC QFYQAYAEVV GFRVRIGQLF  240
RSKVDGSITS RRFVCSKEGF QHPSRMGCGA YMRIKKQDSG GWIVDRLNKD HNHELEPGKK  300
NAGMKKITED VTGGLDSVDL IELNDFGNHI KKTRENTIGK EWYPVLLEYF QTRQAEDTGF  360
FYAVELDSNG SCMSVFWADS RARFACSQFG DAVVFDTSYR KGNYSVPFAT FVGFNHHRQP  420
VLLGCALISD ESKEVFTWLF QTWLRAMSGH RPRSIVADQD LAIQQAVAQI FPGTHHRYSS  480
WQIRAKEREN LRAFPNEFKY EYEKCIYQTQ TTVEFDTMWN ALVNKYGLRD NMWLREMYEK  540
RENWVPAYLR GTFFGGIPIN GNVEPFFGTS LDSLTPLREF VSCYEQGLEQ RREEERKEDF  600
NSYNLQPFLQ TKEPVEEQCR RLYTLTIFRI FQNELVQSYN YLGLKTYEEG AISRFLVRKC  660
GNENEKHAVT FSATNLNVSC SCQMFEYEGL LCRHILKVFN LLDMRELPSR YILHRWTKNA  720
EFGFVRDVES GVSSQDLKAL MVWSLREAAS KYIEFGTSSL EKYKLAYEIM REGGKKLCWQ  780
R

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551795.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059074.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	XP_010551787.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]