PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551796.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family FAR1
Protein Properties Length: 765aa    MW: 87985.5 Da    PI: 8.0891
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.7e-2144118189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY +YA+++GF+vr  ++++s+++g++t+r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  XP_010551796.1  44 EFYTSYATRTGFKVRSGQMYRSRTDGTVTSRRFVCSKEGFQLN--------------SRTGCPAFVRVQRRDTGKWVLDQIQKEHNHEL 118
                     6***************************************876..............589***************************98 PP
2FAR168.81.3e-21205281191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++kk+++g w v++l+++HnHel p
  XP_010551796.1 205 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKKQDSGGWIVDRLNKDHNHELEP 281
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1644118IPR004330FAR1 DNA binding domain
PfamPF031015.8E-17205281IPR004330FAR1 DNA binding domain
PfamPF105514.2E-27377469IPR018289MULE transposase domain
PROSITE profilePS5096610.237651687IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-8662689IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-7663684IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MVVKAYPLGM VRIMNNNGIG EDEGDSGVEP YVGLEFDSVE EAREFYTSYA TRTGFKVRSG  60
QMYRSRTDGT VTSRRFVCSK EGFQLNSRTG CPAFVRVQRR DTGKWVLDQI QKEHNHELGG  120
QVEETPRPPV VSQRPPAPTK LAVSVPHRPK MKVIDESDKA RSCPSGVISF KRFKGAGDGG  180
DVQTQPNAAE PYAGLEFSSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS  240
KEGFQHPSRM GCGAYMRIKK QDSGGWIVDR LNKDHNHELE PGKKNAGMKK ITEDVTGGLD  300
SVDLIELNDF GNHIKKTREN TIGKEWYPVL LEYFQTRQAE DTGFFYAVEL DSNGSCMSVF  360
WADSRARFAC SQFGDAVVFD TSYRKGNYSV PFATFVGFNH HRQPVLLGCA LISDESKEVF  420
TWLFQTWLRA MSGHRPRSIV ADQDLAIQQA VAQIFPGTHH RYSSWQIRAK ERENLRAFPN  480
EFKYEYEKCI YQTQTTVEFD TMWNALVNKY GLRDNMWLRE MYEKRENWVP AYLRGTFFGG  540
IPINGNVEPF FGTSLDSLTP LREFVSCYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE  600
EQCRRLYTLT IFRIFQNELV QSYNYLGLKT YEEGAISRFL VRKCGNENEK HAVTFSATNL  660
NVSCSCQMFE YEGLLCRHIL KVFNLLDMRE LPSRYILHRW TKNAEFGFVR DVESGVSSQD  720
LKALMVWSLR EAASKYIEFG TSSLEKYKLA YEIMREGGKK LCWQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551796.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551798.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X5
RefseqXP_019059066.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLV4LFZ70.0V4LFZ7_EUTSA; Uncharacterized protein
STRINGXP_010551787.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]