PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551826.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 259aa    MW: 29583.5 Da    PI: 9.4421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll ++v+++G g W+ ++++ g++R++k+c++rw++yl
   XP_010551826.1 10 KGTWTAEEDGLLRKCVEKYGEGKWHQVPSRAGLNRCRKSCRLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding50.45e-1663108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr ++eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010551826.1  63 RGRLSPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
                      8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22559IPR009057Homeodomain-like
PROSITE profilePS5129419.326557IPR017930Myb domain
SuperFamilySSF466894.4E-297104IPR009057Homeodomain-like
SMARTSM007176.2E-15959IPR001005SANT/Myb domain
PfamPF002494.2E-161057IPR001005SANT/Myb domain
CDDcd001673.58E-101257No hitNo description
PROSITE profilePS5129426.11858112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2360111IPR009057Homeodomain-like
SMARTSM007174.1E-1562110IPR001005SANT/Myb domain
PfamPF002492.4E-1463108IPR001005SANT/Myb domain
CDDcd001671.89E-1067108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEGRSQGLRK GTWTAEEDGL LRKCVEKYGE GKWHQVPSRA GLNRCRKSCR LRWLNYLKPS  60
IKRGRLSPEE VDLVIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KQDQPSHSKT  120
APACKKKINV GFPTEPVQKI DVIKPRPRSF SDSTQRRLLN PPPEIPFRGS KNKDSDNNDG  180
NNDDIFHGKK TITGCICKDE YEITSTVVKE GREVMWWENL LEEGEGTAAE EDEKIAAESS  240
WMNNSPATFD VDLWNLLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2281135109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551826.10.0PREDICTED: transcription factor MYB114-like isoform X2
SwissprotQ9FNV97e-75MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F55e-80E5D8F5_BRAOB; MYB2
STRINGXP_010551818.11e-161(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-76myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]