PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551860.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 247aa    MW: 28493.1 Da    PI: 9.2419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WTteEd ll ++v+++G g W+ ++++ g++R++k+c++rw++yl
   XP_010551860.1 10 KGTWTTEEDNLLRKCVEKYGEGKWHQVPSRAGLNRCRKSCRLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding49.59.5e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr ++eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++
   XP_010551860.1  63 RGRLSPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDIKNYWNTH 107
                      8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.554561IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-22559IPR009057Homeodomain-like
SuperFamilySSF466892.94E-297104IPR009057Homeodomain-like
SMARTSM007173.7E-16959IPR001005SANT/Myb domain
PfamPF002494.7E-171057IPR001005SANT/Myb domain
CDDcd001671.08E-101257No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2360111IPR009057Homeodomain-like
PROSITE profilePS5129421.21262112IPR017930Myb domain
SMARTSM007171.3E-1462110IPR001005SANT/Myb domain
PfamPF002494.9E-1463107IPR001005SANT/Myb domain
CDDcd001671.13E-967108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGRSQGLRK GTWTTEEDNL LRKCVEKYGE GKWHQVPSRA GLNRCRKSCR LRWLNYLKPN  60
IKRGRLSPEE VDLVIRLHKL LGNRWSLIAG RLPGRTANDI KNYWNTHISK KQELSSNCKI  120
KSTWEKKTAD VSFPTEPVRK IEVIKPRPRS FSDYSRRNLL GAQTKTPLIT GSNNKDSDDD  180
HHHNNNNGKN TCEKDENGII NTTVNEGKEI MWWEDLLEEG EGAEENPWMN PTKATCGDDD  240
LWNLLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2281115107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551860.10.0PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV95e-77MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0D3CYD91e-77A0A0D3CYD9_BRAOL; Uncharacterized protein
TrEMBLE5D8F41e-77E5D8F4_BRAOB; MYB2
STRINGXP_010551860.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-75myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]