PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551931.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 278aa MW: 30388.4 Da PI: 7.0325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3e-10	188	231	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq XP_010551931.1 188 AAAKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 231 6679****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-14	180	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-12	180	235	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-12	181	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-7	188	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MAALNDHSDV ITDPNYVSKP NSSNDISSPE DYPEGAYASS GSYKMNSDHQ GFVFHPSDQS 60 VHEHSLIDFN GSFLNFVHQP SFDPVMEGNN MNYGYSSSWS NHQIGSPNPF EKTSSFTLEA 120 SSRSTTTSHD HGDWLYSGSR PVSPSLKSDG NKRPYTGESA QASKKPCGGS NVKAKPKATS 180 SAKDPQSAAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QLQVKVLAAD 240 EFWPSQGGKA PDISQVKEAI DAILSSQQRD KNSIPKSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551931.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551931.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-104	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	D7MII2	1e-105	D7MII2_ARALL; Basic helix-loop-helix family protein
STRING	XP_010551931.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-106	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]