PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551938.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 167aa    MW: 18903.9 Da    PI: 9.575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.82.5e-1499146159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fp           +vkk+v+r ++d+ vv++tY g H+h 
  XP_010551938.1  99 LDDGYRWRKYGQKAVKNNRFP-----------SVKKQVQRLTRDEGVVVTTYDGVHTHA 146
                     59*******************...........69************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-1884146IPR003657WRKY domain
SuperFamilySSF1182901.31E-1691147IPR003657WRKY domain
PROSITE profilePS5081116.35294148IPR003657WRKY domain
SMARTSM007741.5E-1899147IPR003657WRKY domain
PfamPF031062.2E-9100145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDNHEYNQML FPCPSSSSSS SAYSSDFHNL LGLSNNSSIN AGEGSSLTQT ATLSRLGNDI  60
EGTDPSGRGD QVNNDKKKKK KKERKERFVF QTRSQVDILD DGYRWRKYGQ KAVKNNRFPS  120
VKKQVQRLTR DEGVVVTTYD GVHTHAVDKP SDDFQHILSQ MHVYTPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-1690145874Probable WRKY transcription factor 4
2lex_A4e-1690145874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581KKKKKKK
27684KKKKKKERK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551938.11e-123PREDICTED: probable WRKY transcription factor 45 isoform X2
TrEMBLV7CWD67e-48V7CWD6_PHAVU; Uncharacterized protein
STRINGXP_010551936.11e-100(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.11e-41WRKY DNA-binding protein 45