PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551942.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 211aa MW: 23624.2 Da PI: 9.9591

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.3	1.9e-33	19	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 lp G+rF+Ptdeel+v+yL +k+ + +l++ +vi+ +d+++++P+++ +++ek+ yfF+++ k++ +nr ++ +gyWkatg ++++++ XP_010551942.1 19 LPIGYRFRPTDEELIVHYLLRKAFAFPLPA-SVIPVFDVFSSHPRNFT--GEGKEKDRYFFCRKTKQH----LSNRlSACEGYWKATGVERQITA 106 699*************************.99**********8..45678899*98875....567767789********** PP NAM 95 kkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +g++vg+++tL+f++ + + +kt+Wvm ey l XP_010551942.1 107 -SGKTVGMRRTLAFFESdkSPINCNKTRWVMREYCL 141 .999*******6521555789*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-38	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	38.537	19	167	IPR003441	NAC domain
Pfam	PF02365	2.3E-21	20	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
METGMEAGKR EVVKGGVELP IGYRFRPTDE ELIVHYLLRK AFAFPLPASV IPVFDVFSSH 60 PRNFTGEGKE KDRYFFCRKT KQHLSNRLSA CEGYWKATGV ERQITASGKT VGMRRTLAFF 120 ESDKSPINCN KTRWVMREYC LVGSASAIAK MFGMGSGEWA VYSVFQRRRS KAVRSRERDG 180 HVSCIDFTLE SAGEIPPPPP SSAGAVILTL T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	17	142	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	17	142	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	17	142	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	17	142	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	17	142	18	146	NAC domain-containing protein 19
3swm_B	2e-20	17	142	18	146	NAC domain-containing protein 19
3swm_C	2e-20	17	142	18	146	NAC domain-containing protein 19
3swm_D	2e-20	17	142	18	146	NAC domain-containing protein 19
3swp_A	2e-20	17	142	18	146	NAC domain-containing protein 19
3swp_B	2e-20	17	142	18	146	NAC domain-containing protein 19
3swp_C	2e-20	17	142	18	146	NAC domain-containing protein 19
3swp_D	2e-20	17	142	18	146	NAC domain-containing protein 19
4dul_A	2e-20	17	142	15	143	NAC domain-containing protein 19
4dul_B	2e-20	17	142	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551942.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551942.1	1e-157	PREDICTED: NAC domain-containing protein 41
TrEMBL	V4LG11	2e-69	V4LG11_EUTSA; Uncharacterized protein
STRING	XP_010551942.1	1e-156	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	1e-65	NAC domain containing protein 84