PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552164.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 333aa    MW: 37183.7 Da    PI: 7.9902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.7e-15260284226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tG+C+yGd C+FaHg
  XP_010552164.1 260 KTELCNKWQETGECPYGDHCQFAHG 284
                     8***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.9E-19253291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-11256290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901258286IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8258285IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-12260284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8292326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12292325IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEKDASLGSD PTSVTTLNSP PPPLSPQSDK SSHKHQEEFA ANFASLYQSI FSSESQFPSS  60
LSLSPSPPSS SSPAAPPDIT TENRLHQARV ILEYDCNELN ENYELCLLRL NSLTTELESL  120
RQENAALRLA NAEILRLIHQ CPTTNISSNA AQLPVPNLPK RQQISDFGRH GGSLEPSRPV  180
RRNNVERTVL PKSISVRSSG YLRMNKRSHG YGGASRQASQ HRFTSQLVSD SVTSEKISLL  240
IGKGEKEAVE LEVYRQGMVK TELCNKWQET GECPYGDHCQ FAHGIDELRP VIRHPRYKTE  300
VCRMIVNGAT CPYGHRCHFR HSLTEQERGL LPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-20259325470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552164.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-105C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J3HSH11e-131A0A1J3HSH1_NOCCA; Zinc finger CCCH domain-containing protein 14 (Fragment)
STRINGXP_010552164.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-85C3H family protein