PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552418.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27149.2 Da    PI: 10.1454
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.3e-291058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rienk++rqvtfskRr+g+ KKA+E+SvLCdaeva+iifs++gkl+eys
  XP_010552418.1 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIIFSPKGKLFEYS 58
                    8***********************************************8 PP
2K-box89.84.9e-308617412100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + ++++e +kL + i+ Lqr++Rhl+Ge+L+ Lsl+eLq+Le qL+++lkk R++Kn+l+le+i +lqkkekel+e  ++Lrkkl+e
  XP_010552418.1  86 DPQGNCSTECSKLLRMIDVLQRSLRHLKGEELDALSLRELQSLEMQLDTALKKTRTRKNQLMLESIAQLQKKEKELKELRNQLRKKLDE 174
                     5567899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.95161IPR002100Transcription factor, MADS-box
CDDcd002651.93E-39278No hitNo description
SuperFamilySSF554551.83E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.58788178IPR002487Transcription factor, K-box
PfamPF014861.1E-2488172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIIFSP KGKLFEYSAG  60
SSMEKILDRY ERCSYSSQEL PPPSSDPQGN CSTECSKLLR MIDVLQRSLR HLKGEELDAL  120
SLRELQSLEM QLDTALKKTR TRKNQLMLES IAQLQKKEKE LKELRNQLRK KLDESKEVRE  180
IDRTRDLERQ NSSSFASPRP PPSLLGGREA GEADGGTLIR PPTNTTLPHW MPRCSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20170169MEF2C
5f28_B3e-20170169MEF2C
5f28_C3e-20170169MEF2C
5f28_D3e-20170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552418.11e-171PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S77e-83AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLV4KMQ11e-113V4KMQ1_EUTSA; Uncharacterized protein
STRINGXP_010552418.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-99AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]