PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552430.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 434aa    MW: 48943.3 Da    PI: 7.132
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.41.2e-1063743434374
            GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal......................................kl.fsevsP 89 
                       ++++Rl++ f++AL+ r++r+ ++ y+  p  + + ++++ + + +                                       l  ++++P
  XP_010552430.1  37 WLNSTERLVHQFAKALSVRISRHLEQQYQPQPRLQPQFYDMIASNSTVftssickehflpwtsnnnnninsssssssvdddffqscYLwVNQITP 131
                     4489******************9999998877777776664333333367889***************************9998752269***** PP

            GRAS  90 ilkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetgerLak 167
                     +++fshltaNqaIl+a+e+           +Hi+D+di+qGlQWp+++qaL++R++          pp lRiTg+g+    + ++l++tg+rL++
  XP_010552430.1 132 FIRFSHLTANQAILDATETTstnhagvgAVIHILDLDITQGLQWPPFMQALSERSSTnpspvhapsPPILRITGCGR----DLTRLNRTGDRLSR 222
                     ******************9878787776678************************4445667777799*********....************** PP

            GRAS 168 fAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                     fA++lg++fef++l       ++ +l   ++e+L+v p+E laVn+v+ lh+l+ ++       + vL+++k l+P++v+ +e+ea+h+++ F++
  XP_010552430.1 223 FAHSLGLRFEFHPLllhdgdpASLALRLRDPESLSVVPEEILAVNCVHYLHNLVTDDPRDI---RMVLSAIKALNPRIVTAAEREANHGATAFAQ 314
                     **************887777656677888************************95555544...59***************************** PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                     rf+ea+++y+a+f+slea+lp++s+er ++E+ ++grei++++a+e+aerr+rh+++e W+++++++GF +vp++ +a +qaklllr ++ s+gy
  XP_010552430.1 315 RFSEAVDHYAAVFESLEATLPPNSRERLTLEQWWFGREIMDIIAAEEAERRQRHQRYEVWEAMFRSSGFCNVPIGGFALSQAKLLLRLHYpSEGY 409
                     *********************************************************************************************** PP

            GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                     ++++ ++sl+lgW+++ L+svS+Wr
  XP_010552430.1 410 KLQSLKNSLFLGWQNHLLFSVSSWR 434
                     ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.7531413IPR005202Transcription factor GRAS
PfamPF035144.0E-10437434IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTTPPTSTPT LRRIFGSPPP PPPELPTASF SAPPSSWLNS TERLVHQFAK ALSVRISRHL  60
EQQYQPQPRL QPQFYDMIAS NSTVFTSSIC KEHFLPWTSN NNNNINSSSS SSSVDDDFFQ  120
SCYLWVNQIT PFIRFSHLTA NQAILDATET TSTNHAGVGA VIHILDLDIT QGLQWPPFMQ  180
ALSERSSTNP SPVHAPSPPI LRITGCGRDL TRLNRTGDRL SRFAHSLGLR FEFHPLLLHD  240
GDPASLALRL RDPESLSVVP EEILAVNCVH YLHNLVTDDP RDIRMVLSAI KALNPRIVTA  300
AEREANHGAT AFAQRFSEAV DHYAAVFESL EATLPPNSRE RLTLEQWWFG REIMDIIAAE  360
EAERRQRHQR YEVWEAMFRS SGFCNVPIGG FALSQAKLLL RLHYPSEGYK LQSLKNSLFL  420
GWQNHLLFSV SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5112143396377Protein SCARECROW
5b3h_D2e-5112143396377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552430.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-162SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1J3E1D61e-163A0A1J3E1D6_NOCCA; Scarecrow-like protein 18
STRINGXP_010552430.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-142GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]