PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552446.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 983aa    MW: 109977 Da    PI: 5.7624
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.84.7e-54121282117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL+n+e+++lt +++ +p+sgsl+L+n++++++frkDG++w++kkdg+++ E+he+LKvg+ e+l+cyYah+e+np+fq
  XP_010552446.1  12 YQEaQTRWLKPAEVLFILQNHERYQLTPKAPLKPTSGSLFLFNKRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNAEALNCYYAHGEQNPNFQ 106
                     56769****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ ++e+ivlvhy++v
  XP_010552446.1 107 RRSYWMLDPAYEHIVLVHYRDV 128
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.1548134IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7811129IPR005559CG-1 DNA-binding domain
PfamPF038594.3E-4714128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-9408498IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.34E-16412496IPR014756Immunoglobulin E-set
PfamPF018332.2E-9412495IPR002909IPT domain
CDDcd001021.87E-6412497No hitNo description
Gene3DG3DSA:1.25.40.203.7E-13609705IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-14611705IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.008611703IPR020683Ankyrin repeat-containing domain
CDDcd002046.19E-12616703No hitNo description
PfamPF127963.4E-6628704IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.553644676IPR002110Ankyrin repeat
SMARTSM002480.0079644673IPR002110Ankyrin repeat
SMARTSM0001517762784IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.535763792IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.03E-7765785IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001511816838IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.03E-7817868IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.547817846IPR000048IQ motif, EF-hand binding site
PfamPF006120.24819837IPR000048IQ motif, EF-hand binding site
SMARTSM000151.8E-4839861IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993840864IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5842861IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MQQSEYDVNA LYQEAQTRWL KPAEVLFILQ NHERYQLTPK APLKPTSGSL FLFNKRVLKF  60
FRKDGHQWRR KKDGRAIAEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI  120
VLVHYRDVSE GKEGKQGSGH ILHFSPDSSS FFSSPSSIAT QNTSHNHYIS DSTEFLQQYS  180
SSSRSAEESS ETVLKGNGVE TPADSTSSSD FEVKQALRRL EEQLSLGDDN ANCIDPLVCH  240
NENVGFPECR REIPDSAQTT TAPYRLESNK LERCYGGYVG NHDHSNNLML VKNDSGSIEE  300
CGDEASESWK DMLETCEASL VLDTEEITRS SKGLLPEVED DSNWDYSTQI EQSSYLLPQE  360
HASFNVRAYS SVLEAHHEND AKYYGTMSDQ GRARIPLEQE VSLTVAHAQK FTIQEISPNW  420
GCANETTKVI IVGSFLCDPT ESTWRCMFGS TEVPLKIIKE GVLQCEAPPF PPGKVTLCIT  480
SGNRVSCSQI REFEYRDNTI QYCTRCNMPQ TSTNPDELLL LVRFVQMLLS DQKSDRKDNL  540
ESGIDNLSRK LEADDDDDKW SHVIEAILDG NGTSPSTVDW LLQELLRDKL HSWLSSRSLG  600
EGTGSSSLSK KEQGIIHMVA GLGFEWALNP ILRHGVSVDF RDINGWSALH WAARFGREKL  660
VAALIALGAS AGAVTDPCSQ DPIGKTAASI AASSGHKGLA GYLSEVALTN HLSSLSLEET  720
EISKDSAQVQ AEITVSSISK PSLLPGTEDQ LSLKDTLEAV RNAAQAAARI QAAFRAHSFR  780
KRQQREEACL REYGFHSEDL QGLSAVSKLA FGNARDYNSA ALSVQKKYRG WKGRKDFLAL  840
RQKVVKIQAH VRGYQVRKHY KVICWAVGIL DKVVLRWRRK GVGLRGFRQD AETPDKEEEG  900
EDEEDILKVF RKTKVDGTVN EAFSRVLSMV NSPDAQQQYR RMLGRFYQAK AELGTSETEA  960
SASASDTVLD MAEMDKDDLS LLH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552446.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552446.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A087HG820.0A0A087HG82_ARAAL; Uncharacterized protein
STRINGXP_010552446.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]