PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552489.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 425aa MW: 47528.9 Da PI: 7.4303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	349	387	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010552489.1 349 RKEKLGERIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 387 66788899******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.788	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.75E-5	347	391	No hit	No description
SuperFamily	SSF47459	4.06E-11	347	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	351	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MESANLHQHH QDHHLQLAGS SSSSSLGNST DPFCYGASTT AHQWSPAAGV SLNSMSLSQN 60 YSNEMIHTRD HNNVGECLDL SHMHNHSMTQ QDLAIQWHHH QSSYDNDHHH HDHHHNHHHH 120 QDHQSLLKIK EELSSSNQIQ ADNIPKFTDM LNNPLATTDY LKMKEHDKDF NDMTEKLLLK 180 TISSLDGEYC NYPPSSSPSP SSSSSSHRGK SFSQIHPSLN ISSLSHSPTM SMSMSMSMNM 240 NMNMPRPFDM NMHVLDGRSL VSGSGLVNNA NPPEINLGMM SRGSLPFGLG DQNFQQTITP 300 IDQMTHFSND PQASEGKRNN LLMAAKGGEN IHKKPRVESR SSCPPLKVRK EKLGERIAAL 360 QQLVSPFGKT DTASVLMEAI GYIKFLQNQI ETLSVPYMRA SRNRTVKSSQ RGCAFNDGMK 420 NRNRI

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MESANLHQHH QDHHLQLAGS SSSSSLGNST DPFCYGASTT AHQWSPAAGV SLNSMSLSQN  60
YSNEMIHTRD HNNVGECLDL SHMHNHSMTQ QDLAIQWHHH QSSYDNDHHH HDHHHNHHHH  120
QDHQSLLKIK EELSSSNQIQ ADNIPKFTDM LNNPLATTDY LKMKEHDKDF NDMTEKLLLK  180
TISSLDGEYC NYPPSSSPSP SSSSSSHRGK SFSQIHPSLN ISSLSHSPTM SMSMSMSMNM  240
NMNMPRPFDM NMHVLDGRSL VSGSGLVNNA NPPEINLGMM SRGSLPFGLG DQNFQQTITP  300
IDQMTHFSND PQASEGKRNN LLMAAKGGEN IHKKPRVESR SSCPPLKVRK EKLGERIAAL  360
QQLVSPFGKT DTASVLMEAI GYIKFLQNQI ETLSVPYMRA SRNRTVKSSQ RGCAFNDGMK  420
NRNRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552489.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552489.1	0.0	PREDICTED: transcription factor bHLH110
Swissprot	Q9SFZ3	1e-128	BH110_ARATH; Transcription factor bHLH110
TrEMBL	D7KBT3	1e-133	D7KBT3_ARALL; Uncharacterized protein
STRING	XP_010552489.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-104	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]