PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552542.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 406aa MW: 44287.9 Da PI: 6.8534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.7e-09	221	269	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010552542.1 221 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 269 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.50E-11	216	273	No hit	No description
SuperFamily	SSF47459	3.53E-17	216	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	218	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-17	219	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-6	221	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MAQIPADSGF ITRAARFSCY GSGIFGEMLN QPLGVPEPIG LYSQVCGTMQ RLQDMPVGTV 60 AKQAHGGQCS GNELNVGELP KDASTAVRDG FKNDAGTVIH VGANEEVKVD KPGCSHMSDE 120 TRSSGGNGRN ELQVGELKSG ETPSKCFDRK KRKINSQGYE PNQSSRALQS GEEPDNNGEK 180 KENYERNTNL SPKKTSGGKQ ASDPPKEGYI HMRARRGQAT NSHSLAERVR REKISERMKF 240 LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLELNL DGLMAKEALQ 300 LRPGPSSAPP FPQSIMPMAY PPLPHLSQPG FMEPTLSCMR NPSDVLRQTV TSPLSPMNEG 360 GFKRPETQGW ECDLQNVVHV CYGTDATPEN QEATGSLPPA DMKVEQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MAQIPADSGF ITRAARFSCY GSGIFGEMLN QPLGVPEPIG LYSQVCGTMQ RLQDMPVGTV  60
AKQAHGGQCS GNELNVGELP KDASTAVRDG FKNDAGTVIH VGANEEVKVD KPGCSHMSDE  120
TRSSGGNGRN ELQVGELKSG ETPSKCFDRK KRKINSQGYE PNQSSRALQS GEEPDNNGEK  180
KENYERNTNL SPKKTSGGKQ ASDPPKEGYI HMRARRGQAT NSHSLAERVR REKISERMKF  240
LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLELNL DGLMAKEALQ  300
LRPGPSSAPP FPQSIMPMAY PPLPHLSQPG FMEPTLSCMR NPSDVLRQTV TSPLSPMNEG  360
GFKRPETQGW ECDLQNVVHV CYGTDATPEN QEATGSLPPA DMKVEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552542.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552542.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9	1e-141	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	1e-147	R0GH97_9BRAS; Uncharacterized protein
STRING	XP_010552542.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-145	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]