PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552543.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 394aa MW: 42956.5 Da PI: 6.8531

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	209	257	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010552543.1 209 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 257 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-17	204	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-11	204	261	No hit	No description
PROSITE profile	PS50888	15.478	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-17	207	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	209	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	212	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MAQIPADSGF ITRAARFSCY GSGIFGEMLN QPLGVPEPIG LYSQVCGTMQ RLQDMPVGTV 60 AKQAHGGQCS GNELNVGELP KDASTAVRDG FKNDAGTVIH VGANEEVKVD KPGCSHMSDE 120 TRSSGGNGRN ELQVGELKSG ETPSKCFDRK KRKINSQSGE EPDNNGEKKE NYERNTNLSP 180 KKTSGGKQAS DPPKEGYIHM RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVT 240 GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLELNLDG LMAKEALQLR PGPSSAPPFP 300 QSIMPMAYPP LPHLSQPGFM EPTLSCMRNP SDVLRQTVTS PLSPMNEGGF KRPETQGWEC 360 DLQNVVHVCY GTDATPENQE ATGSLPPADM KVEQ

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MAQIPADSGF ITRAARFSCY GSGIFGEMLN QPLGVPEPIG LYSQVCGTMQ RLQDMPVGTV  60
AKQAHGGQCS GNELNVGELP KDASTAVRDG FKNDAGTVIH VGANEEVKVD KPGCSHMSDE  120
TRSSGGNGRN ELQVGELKSG ETPSKCFDRK KRKINSQSGE EPDNNGEKKE NYERNTNLSP  180
KKTSGGKQAS DPPKEGYIHM RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVT  240
GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLELNLDG LMAKEALQLR PGPSSAPPFP  300
QSIMPMAYPP LPHLSQPGFM EPTLSCMRNP SDVLRQTVTS PLSPMNEGGF KRPETQGWEC  360
DLQNVVHVCY GTDATPENQE ATGSLPPADM KVEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552543.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552543.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
Swissprot	Q9CAA9	1e-137	BH049_ARATH; Transcription factor bHLH49
TrEMBL	V4KM38	1e-142	V4KM38_EUTSA; Uncharacterized protein
STRING	XP_010552542.1	0.0	(Tarenaya hassleriana)
STRING	XP_010552545.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-140	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]