PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552551.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29787.1 Da    PI: 8.0207
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_010552551.1  9 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSHKGKLFEYST 59
                    79***********************************************96 PP
2K-box103.82.1e-348417410100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++  + +++ e+ +Lk++ie L++++Rh+lGedL+s+slkeLq+LeqqL++slk+iRs+Kn+l+ e+i+elq+kek++qe+n +L k+++e
  XP_010552551.1  84 DADINGNWTMEFYRLKAKIELLEKNLRHYLGEDLDSMSLKELQNLEQQLDTSLKHIRSRKNQLMSESINELQRKEKAIQEQNSMLAKQIKE 174
                     5555789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002659.55E-41279No hitNo description
SuperFamilySSF554552.09E-33285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-3087172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.05188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KANEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMEKILERY ERYNYAERQL VAPDADINGN WTMEFYRLKA KIELLEKNLR HYLGEDLDSM  120
SLKELQNLEQ QLDTSLKHIR SRKNQLMSES INELQRKEKA IQEQNSMLAK QIKEREKILK  180
AQHDHWEQQS HGHNFQPPVA PPPPPPHHPF MFPHEASLFL NMGGMYQEDP SELRRNDLDL  240
TLEPIFNCNL GCFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21174173MEF2C
5f28_B1e-21174173MEF2C
5f28_C1e-21174173MEF2C
5f28_D1e-21174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls floral meristem identity. Is also required for normal development of sepals and petals. Is required for the transition of an influorescence meristem into a floral meristem. Interacts with LEAFY (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552551.10.0PREDICTED: floral homeotic protein APETALA 1-like
SwissprotP0DI141e-147AP1_BRARP; Floral homeotic protein APETALA 1
SwissprotQ412761e-147AP1_SINAL; Floral homeotic protein APETALA 1
TrEMBLJ7GRA20.0J7GRA2_9ROSI; MADS-box transcription factor APETALA1
STRINGXP_010552551.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-139MIKC_MADS family protein
Publications ? help Back to Top
  1. Menzel G,Apel K,Melzer S
    Isolation and analysis of SaMADS C, the APETALA 1 cDNA homolog from mustard.
    Plant Physiol., 1995. 108(2): p. 853-4
    [PMID:7610185]