PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552572.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 311aa MW: 34805.2 Da PI: 6.7947

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.2e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rFveav+qLGG+ekAtPk ++++m ++gLtl+h+kSHLQkYRl XP_010552572.1 18 KPRLKWTSELHHRFVEAVNQLGGPEKATPKGVMKMMCIPGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-30	16	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-17	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-23	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-21	122	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MENIQKPSMN LVLSTDTKPR LKWTSELHHR FVEAVNQLGG PEKATPKGVM KMMCIPGLTL 60 YHLKSHLQKY RLGKSLQLGG SCVNDKHEEA VPADENQEVH TNNAHEGVEG GATKEKQDES 120 EQMEEALQMQ MEVQRKLHEQ IEVQRRLQVK IEAQGKYLQS VLKKAQETLS GYTSSNLGLA 180 FARSELSRLA SMVNNGGPSS SFSELTEAEE DEDEETKGGF LGSKKPKNVR PQTRCSVESS 240 LTSSESTETK SENCESFTRR SLELPLMEMR PEGMNTKKRR RSSNDAVCVE QPQEKRAVGV 300 YGGEHLRLSL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	18	74	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552572.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552572.1	0.0	PREDICTED: myb family transcription factor PHL8-like
Swissprot	F4I274	1e-115	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A178WNY6	1e-112	A0A178WNY6_ARATH; Uncharacterized protein
STRING	XP_010552572.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	1e-102	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]