PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552589.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34334.2 Da    PI: 5.0804
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-1895148356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ eLAk l+L+ rqV +WFqNrRa++k
  XP_010552589.1  95 KKRRLSVEQVKTLENSFELANKLEPERKLELAKALHLQPRQVAIWFQNRRARWK 148
                     456899***********************************************9 PP
2HD-ZIP_I/II124.64.6e-4094185192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqvk+LE+sFe  +kLeperK ela++L+lqprqva+WFqnrRAR+ktkqlE+dy+ Lkr+++ l++en+ L+++++eL++++ 
  XP_010552589.1  94 EKKRRLSVEQVKTLENSFELANKLEPERKLELAKALHLQPRQVAIWFQNRRARWKTKQLERDYDLLKRQVEILNAENDFLRTQNQELHAQIV 185
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1986152IPR009057Homeodomain-like
PROSITE profilePS5007116.8690150IPR001356Homeobox domain
SMARTSM003894.0E-1793154IPR001356Homeobox domain
CDDcd000863.04E-1695151No hitNo description
PfamPF000462.9E-1595148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1897157IPR009057Homeodomain-like
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021831.2E-11150190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSCNHAMAFF PANFMFQNPH ESDHQPQPPL VPLLPSCSIP QDFHGGVASI LGKRSKMNTY  60
SESTSNFGGC CDVETGNMNG EEEMLSDDGS QIGEKKRRLS VEQVKTLENS FELANKLEPE  120
RKLELAKALH LQPRQVAIWF QNRRARWKTK QLERDYDLLK RQVEILNAEN DFLRTQNQEL  180
HAQIVALKSR ESTESINLNK ETEGSCSNRS DNSSNNIRLD ISAAPPEIDS PPDAPPPPVT  240
GRHFFPPSPA AATATVSVVT NTTTMEFFQG SSSGQSMVKD ETSIGNMFCN IDDHSGYWPW  300
IDQSQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552589.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-144ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A178WPS41e-141A0A178WPS4_ARATH; ATHB13
STRINGXP_010552589.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-112HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]