PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552709.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 172aa    MW: 19948.8 Da    PI: 10.0672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1953107256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Lee F+ n++++ ++++eLA +l+L  rqV vWFqNrRa+ k
  XP_010552709.1  53 RKKLRLTKDQSLLLEESFRVNHTLNPKQKQELALQLNLRPRQVEVWFQNRRARSK 107
                     788899***********************************************98 PP
2HD-ZIP_I/II116.51.5e-3753141189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+k+q+ lLEesF+ +++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  XP_010552709.1  53 RKKLRLTKDQSLLLEESFRVNHTLNPKQKQELALQLNLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNRRLQREVEELRA 141
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-1943110IPR009057Homeodomain-like
PROSITE profilePS5007117.42749109IPR001356Homeobox domain
SMARTSM003891.9E-1751113IPR001356Homeobox domain
CDDcd000863.70E-1553110No hitNo description
PfamPF000461.3E-1653107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-1858107IPR009057Homeodomain-like
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
SMARTSM003403.3E-20109152IPR003106Leucine zipper, homeobox-associated
PfamPF021839.4E-10109143IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSVSPSNSPR LELTISVAGF SQLPSSGARD LDINEKAEEE DDAQWMRMGG STRKKLRLTK  60
DQSLLLEESF RVNHTLNPKQ KQELALQLNL RPRQVEVWFQ NRRARSKLKQ TEMECEYLKR  120
WFGTLTEQNR RLQREVEELR AMKMGPPTDT SRPLSVSSLT MCPRCERVTP SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157TRKKLRL
2101109RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552709.11e-123PREDICTED: homeobox-leucine zipper protein ATHB-17 isoform X1
SwissprotQ8S9N63e-72ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A2C9UFF95e-76A0A2C9UFF9_MANES; Uncharacterized protein
TrEMBLA0A445EZH05e-76A0A445EZH0_GLYSO; Homeobox-leucine zipper protein ATHB-17
TrEMBLI1ND775e-76I1ND77_SOYBN; Uncharacterized protein
STRINGXP_010552709.11e-122(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-74homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]