PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552710.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 106aa    MW: 12183.8 Da    PI: 10.0967
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-1953105254
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     rk+ ++tk+q   Lee F+ n++++ ++++eLA +l+L  rqV vWFqNrRa 
  XP_010552710.1  53 RKKLRLTKDQSLLLEESFRVNHTLNPKQKQELALQLNLRPRQVEVWFQNRRAS 105
                     788899*********************************************95 PP
2HD-ZIP_I/II75.11.2e-2453104152
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 
                     +kk+rl+k+q+ lLEesF+ +++L+p++K+ela +L+l+prqv+vWFqnrRA
  XP_010552710.1  53 RKKLRLTKDQSLLLEESFRVNHTLNPKQKQELALQLNLRPRQVEVWFQNRRA 104
                     69*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1943104IPR009057Homeodomain-like
PROSITE profilePS5007116.47149106IPR001356Homeobox domain
SMARTSM003895.2E-951106IPR001356Homeobox domain
CDDcd000861.54E-1453104No hitNo description
PfamPF000464.2E-1653105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1758104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSVSPSNSPR LELTISVAGF SQLPSSGARD LDINEKAEEE DDAQWMRMGG STRKKLRLTK  60
DQSLLLEESF RVNHTLNPKQ KQELALQLNL RPRQVEVWFQ NRRASF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552710.13e-72PREDICTED: homeobox-leucine zipper protein ATHB-X isoform X2
SwissprotQ8S9N67e-32ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A438C1451e-34A0A438C145_VITVI; Homeobox-leucine zipper protein ATHB-17
STRINGXP_010552709.12e-69(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-34homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]