PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552813.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 239aa MW: 26955.2 Da PI: 6.74

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	207.8	3.9e-64	6	183	2	169
YABBY 2 dvfssseqvCyvqCnfCntila...........vsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeen 81 ++f+ ++q+C+vqC+fC+til+ vsvP++sl+kvvtvrCGhCtsllsvn++kas +l+a+ h ++++ke++ + + e+e+ XP_010552813.1 6 QLFDLPGQICHVQCGFCTTILLivyddgddddqVSVPFSSLSKVVTVRCGHCTSLLSVNMMKASfipfHLIASLTH-HDQGKEDIIKAT-AEQEA 98 78999*************96555555555558************************99888888999998.556666666543.44556 PP YABBY 82 lksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +k+++ ke s++ v+ s+nede+vprv + v++PPe+rqr+Psayn+fikeei r+ka+nP+i+h+eafs+aaknWahfP++h++ XP_010552813.1 99 CKVHQAKEYSPN-LVA---YSDNEDEDVPRVNQvVNKPPERRQRAPSAYNCFIKEEISRLKAQNPNIAHKEAFSLAAKNWAHFPRVHHK 183 666655554443.333...389******9899*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.8E-55	11	182	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	124	178	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-5	130	178	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTTLNQLFDL PGQICHVQCG FCTTILLIVY DDGDDDDQVS VPFSSLSKVV TVRCGHCTSL 60 LSVNMMKASF IPFHLIASLT HHDQGKEDII KATAEQEACK VHQAKEYSPN LVAYSDNEDE 120 DVPRVNQVVN KPPERRQRAP SAYNCFIKEE ISRLKAQNPN IAHKEAFSLA AKNWAHFPRV 180 HHKRGADQCF SQEVQNAPYN SLHDSANHEF CLPGHEEGSN GYRERKAPRH SIWGKSPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552813.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059150.1	1e-169	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	1e-104	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A087HQN1	1e-108	A0A087HQN1_ARAAL; Uncharacterized protein
STRING	XP_010552813.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-107	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]