PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552868.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 259aa    MW: 29533.1 Da    PI: 9.708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08751345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++ +a + +  +   +W +Ia+ ++ g+t  ++ + + 
   XP_010552868.1  7 TWTKEENKKFERALAVHVEDtpdRWFKIASVIP-GKTVSDVMNQYI 51
                     6*****************99*************.*******99885 PP
2Myb_DNA-binding39.99.6e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_010552868.1 108 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 152
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.908358IPR017884SANT domain
SMARTSM007171.9E-9456IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-11661IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-5752IPR009057Homeodomain-like
CDDcd001671.46E-8753No hitNo description
PfamPF002491.3E-6751IPR001005SANT/Myb domain
PROSITE profilePS5129418.78101157IPR017930Myb domain
SuperFamilySSF466891.72E-15102156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17104156IPR006447Myb domain, plants
SMARTSM007171.7E-10105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-11105157IPR009057Homeodomain-like
CDDcd001677.91E-9108152No hitNo description
PfamPF002494.1E-10108152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMNRDTTWTK EENKKFERAL AVHVEDTPDR WFKIASVIPG KTVSDVMNQY IRLEEDVSDI  60
ESGRIPIPGY PLSSCRFDQA VSYRDLESYR KRANGSRGTE QERKKGVPWT EEEHRRFLLG  120
LLKYGKGDWR NISRNFVVSK TPTQVASHAQ KYYQRQLSGA KDKRRPSIHD ITTVNLLNAN  180
SSCDQNRPFP DGFLPQTQEK SVVFRDMGAE NVTFLGQSSL FPPSLSPYEA AFLDGIKFSG  240
QISYGSGAYS NIKSRNSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-158701173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552870.20.0PREDICTED: transcription factor DIVARICATA-like, partial
SwissprotQ8S9H74e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397XQG41e-109A0A397XQG4_BRACM; Uncharacterized protein
TrEMBLM4CY371e-109M4CY37_BRARP; Uncharacterized protein
STRINGXP_010552868.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-113MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]