PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552945.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 458aa MW: 51420 Da PI: 6.4433

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	29	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yLk+kv ++++++ ++i evdiyk+ePw+L +k+k++++ewyfFs dkky +g r nrat++gyWkatgkd+e+ XP_010552945.1 29 LAPGFRFHPTDEELVSYYLKRKVLKRPVRF-NAIGEVDIYKHEPWELAvySKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 122 579**********************999.89**********85448899999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l+g+kktLvf++grap+g +t+Wvmheyrl XP_010552945.1 123 R-DTQLIGMKKTLVFHSGRAPDGLRTNWVMHEYRL 156 9.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	23	181	IPR003441	NAC domain
PROSITE profile	PS51005	57.838	29	180	IPR003441	NAC domain
Pfam	PF02365	6.8E-28	31	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MGRESVALVT SPSAATPNAP ASAASATALA PGFRFHPTDE ELVSYYLKRK VLKRPVRFNA 60 IGEVDIYKHE PWELAVYSKL KTRDQEWYFF SALDKKYGNG ARMNRATNKG YWKATGKDRE 120 IRRDTQLIGM KKTLVFHSGR APDGLRTNWV MHEYRLVEYE VEKNGSMQQD AYVLCRVFHK 180 NNIGPPSGNR YAPFLEEEWD NGGNGMALIL GEDVRVMGES VPVLEDANGS NEFDQEIQSM 240 SKDLININEL PRETQINNES TRVVPKPDNS LKHERSGEGG EEEEDCPPPL PPCTLNKEAP 300 LPLLQYKRRR QNELMGNSQN SSRTTQDHCS STTTTLTSSA ATNTAISALL EFSLMGTATD 360 NKKENPPLKP HKELSAPPPP RVGNKAGEVR EATLMIPENC TKLIDDLQKE IHQMSVERET 420 FKLEMMSAEA MISILQSRID ALRQENEELR KSGPVKGQ

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MGRESVALVT SPSAATPNAP ASAASATALA PGFRFHPTDE ELVSYYLKRK VLKRPVRFNA  60
IGEVDIYKHE PWELAVYSKL KTRDQEWYFF SALDKKYGNG ARMNRATNKG YWKATGKDRE  120
IRRDTQLIGM KKTLVFHSGR APDGLRTNWV MHEYRLVEYE VEKNGSMQQD AYVLCRVFHK  180
NNIGPPSGNR YAPFLEEEWD NGGNGMALIL GEDVRVMGES VPVLEDANGS NEFDQEIQSM  240
SKDLININEL PRETQINNES TRVVPKPDNS LKHERSGEGG EEEEDCPPPL PPCTLNKEAP  300
LPLLQYKRRR QNELMGNSQN SSRTTQDHCS STTTTLTSSA ATNTAISALL EFSLMGTATD  360
NKKENPPLKP HKELSAPPPP RVGNKAGEVR EATLMIPENC TKLIDDLQKE IHQMSVERET  420
FKLEMMSAEA MISILQSRID ALRQENEELR KSGPVKGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-48	28	182	19	170	NAC domain-containing protein 19
3swm_B	3e-48	28	182	19	170	NAC domain-containing protein 19
3swm_C	3e-48	28	182	19	170	NAC domain-containing protein 19
3swm_D	3e-48	28	182	19	170	NAC domain-containing protein 19
3swp_A	3e-48	28	182	19	170	NAC domain-containing protein 19
3swp_B	3e-48	28	182	19	170	NAC domain-containing protein 19
3swp_C	3e-48	28	182	19	170	NAC domain-containing protein 19
3swp_D	3e-48	28	182	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269\|PubMed:19237690, ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990, ECO:0000269\|PubMed:28207953}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552945.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269\|PubMed:16553893}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552945.1	0.0	PREDICTED: NAC domain-containing protein 82-like isoform X1
Refseq	XP_010552946.1	0.0	PREDICTED: NAC domain-containing protein 82-like isoform X2
Swissprot	Q9SQY0	0.0	NAC52_ARATH; NAC domain containing protein 52
TrEMBL	A0A397ZF44	0.0	A0A397ZF44_BRACM; Uncharacterized protein
STRING	XP_010552946.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	0.0	NAC domain containing protein 50

Publications ? help Back to Top
Higgins JD,Ferdous M,Osman K,Franklin FC The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] Elmayan T, et al. Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]