PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553148.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 183aa MW: 20335.7 Da PI: 8.6021

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H XP_010553148.1 50 FSCSFCKKEFSTSQALGGHQNAH 72 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.77E-7	48	78	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.6E-6	48	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.4E-6	49	74	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.739	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEDKPCPSNS SGSVSSSSMK ENPRLELRLL LEEKTREGGQ SEGGRAARVF SCSFCKKEFS 60 TSQALGGHQN AHKQERAFAK RRKEIELEYP SLSLPFANRT CYNLYDPVMG RSKVYPFNAM 120 GYPLGSYRGF SMTSLLGDRT NDDLSKNLIS KLDKDKDKDE GGKEEQSGSE SRTASGIDLS 180 LRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553148.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553148.1	1e-132	PREDICTED: zinc finger protein 2
TrEMBL	D7M6E6	2e-40	D7M6E6_ARALL; Zinc finger family protein
STRING	XP_010553148.1	1e-131	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	1e-25	C2H2 family protein