PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553326.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8269.85 Da    PI: 10.5627
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA138.31.7e-43976370
            S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    +a++eakG+nPGlivllvvg+lll+fl+gny+lyvyaqknlPP+kkkPvskkklkreklkqGv+vPGe
  XP_010553326.1  9 KANAEAKGFNPGLIVLLVVGSLLLTFLIGNYALYVYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 76
                    7899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.7E-391276IPR006779DNA binding protein S1FA
ProDomPD0190130.0071376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDGDDFSGKA NAEAKGFNPG LIVLLVVGSL LLTFLIGNYA LYVYAQKNLP PKKKKPVSKK  60
KLKREKLKQG VPVPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553326.11e-46PREDICTED: DNA-binding protein S1FA1
SwissprotQ423373e-21S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA34e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010553326.14e-46(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.13e-09S1FA-like DNA-binding protein