PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553392.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Protein Properties

Length: 219aa MW: 25551.5 Da PI: 7.6858

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.1	5.4e-31	46	154	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae+h g e++ l +ede+g W+++++y+++s++yvltkGW +Fvk+++L +gD+v F+ XP_010553392.1 46 FEKPLTPSDVGKLNRLVIPKQHAERHfplananananaG--AEKGHVLCFEDEEGWPWRFRYSYWNSSQSYVLTKGWCRFVKEKHLGAGDVVFFH 138 99***************************99999633..457789******************************************** PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++++l++++ r+ XP_010553392.1 139 RHRTDCRRLFIGWQRR 154 9888*****99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-39	40	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.45E-32	42	153	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.70E-29	44	145	No hit	No description
Pfam	PF02362	9.7E-29	46	154	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-24	46	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.689	46	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSINQYTTDL TDHTFMWQHQ QQYHMMESNL QNDIVFDEDT TKEPLFEKPL TPSDVGKLNR 60 LVIPKQHAER HFPLANANAN ANAGAEKGHV LCFEDEEGWP WRFRYSYWNS SQSYVLTKGW 120 CRFVKEKHLG AGDVVFFHRH RTDCRRLFIG WQRRGGAIGR TSSSSSESSR RLRGHIQYYD 180 QPEYLRHAGK TLESQSVGMT NSKTLRLFGV DMECQLESD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	6e-47	43	166	11	129	DNA-binding protein RAV1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553392.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553392.1	1e-167	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	3e-76	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A397Z9X0	7e-76	A0A397Z9X0_BRACM; Uncharacterized protein
STRING	XP_010553392.1	1e-167	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-74	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]