PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553551.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 281aa    MW: 31301.8 Da    PI: 5.6907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17105152455
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +GVr+++ +g+W+AeIrdp+    r  r +lg+f taeeAa+ +++a+ +l+g
  XP_010553551.1 105 RGVRRRP-WGKWAAEIRDPV----RrVRLWLGTFSTAEEAARIYDRAAIQLRG 152
                     8******.**********63....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-31103166IPR001471AP2/ERF domain
PROSITE profilePS5103223.301103160IPR001471AP2/ERF domain
PRINTSPR003673.4E-9104115IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-20105160IPR016177DNA-binding domain
CDDcd000181.90E-29105159No hitNo description
PfamPF008473.5E-11105152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-27105160IPR001471AP2/ERF domain
PRINTSPR003673.4E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDSTPQMKL TEHRRIMTRV FSDRYTTMPT RFVRISVTDP YATDSDDDEE RPSNGMDAPK  60
RRRIKKYVRE ITFETAPFHS PPEYVAVSKK PAESDTPAMA ARKDRGVRRR PWGKWAAEIR  120
DPVRRVRLWL GTFSTAEEAA RIYDRAAIQL RGSAALTNFS AATNPPQLPH SAGAQSPVSV  180
LRSPTSSSYN EEPPTNPAPL PGREESSALA TEIFSPPFFS SSAGDILDMD ISVSENLGDD  240
VLSFSGDCFG SRFGFGFSNW HAEDHFQDIG DLFGSDHLPP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181031591471Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865PKRRRIKK
25963KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553551.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A3P6F4042e-59A0A3P6F404_BRAOL; Uncharacterized protein
STRINGXP_010553551.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2262444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-58cytokinin response factor 2