PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553618.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 524aa    MW: 57199.1 Da    PI: 6.6338
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.44.2e-25214263151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  XP_010553618.1 214 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQ 263
                     79*******************.***************************** PP
2Response_reg76.41.1e-25291371109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l+++l++  y +v+ ++++  al++l+e++  +Dl+l D+ mpgmdG++ll++   e  +lp+i+++a g  +++   ++ G
  XP_010553618.1  29 VLVVDDDASCLKILEKMLRRLMY-QVTICSQANVALAILREMKgcFDLVLSDVHMPGMDGYKLLEQVGLEM-DLPVIMMSADGRTSTVMTGINHG 121
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  e+l +
  XP_010553618.1 122 ACDYLIKPIRLEALKN 137
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.38E-3526156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4126170No hitNo description
SMARTSM004482.6E-3027139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.44328143IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2229137IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.22E-2830142No hitNo description
Gene3DG3DSA:1.10.10.605.2E-25211263IPR009057Homeodomain-like
PROSITE profilePS5129411.217211270IPR017930Myb domain
SuperFamilySSF466891.33E-15212264IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-22214264IPR006447Myb domain, plants
PfamPF002497.0E-6216263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSGFHNGDGC SGGAAATAVS DQFPAGLRVL VVDDDASCLK ILEKMLRRLM YQVTICSQAN  60
VALAILREMK GCFDLVLSDV HMPGMDGYKL LEQVGLEMDL PVIMMSADGR TSTVMTGINH  120
GACDYLIKPI RLEALKNIWQ HVVRKKWSMN KEVHLSGALD DRDPFRQRND SPENAFSASD  180
GSDGSSKHQR KRSCVRENEE DDIEKDDLDS ASKKPRVVWS VELHQQFVSA VNHLGIDKAV  240
PKRILELMNV PGLTRENVAS HLQALAASGQ IHPQALAALF GQTLPVGNLH QPALVQPTLP  300
GPKCLPLGQS VTYGHPVAKC PPPDVSKNFQ HSVLLAKDHR AGFGAWLPNN HLSTMASEKL  360
NFQQNEDFPE DMSQKSNPTI NVQPSCLVVP SPSSNNCLGV TNSPASVNQT IVGFTNAAVF  420
DHSVLSAQQG PLSPCVSSSA CTVNTDNNVM PRKRHPGFVH RLPSRFAIDE MEWSLDNLDN  480
GKNFDSEIII KQELGVDPMN IVRSGGALIL QQFHSNELTS VFTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19210263154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553618.10.0PREDICTED: two-component response regulator ARR14 isoform X2
SwissprotA2XE311e-108ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-108ORR21_ORYSJ; Two-component response regulator ORR21
SwissprotQ8L9Y31e-111ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A067KT221e-163A0A067KT22_JATCU; Two-component response regulator
STRINGXP_010553611.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-111response regulator 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]