PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553662.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 385aa MW: 43155.8 Da PI: 7.529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	222	269	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i ++++ L+el+P + +k K +L + ++Y++sLq XP_010553662.1 222 CHSLAERVRREKISKRMSLLQELVPGC----NKITGKTVMLDEIINYVQSLQ 269 699**********************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.89E-9	216	273	No hit	No description
SuperFamily	SSF47459	8.64E-16	216	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	217	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.291	218	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	223	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-9	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDGEIGSKHG DETGISEVDM ISMPFYTKAD PFFPSADWDH VVSAMVSSNG LSSSHCISLV 60 TDNQEMSSSF AHYESGSGSG YLDISTSLRP YRNMPECNQT AHCLGSDKKG ESEGRLMRTG 120 EEVHEGHQVS EDGVLGASPC RKRLQLETKM VPSLQWNKKA VEESRKDDQI EDQRQKKTES 180 ERNMVEDSGA KKPTNKKNSG SREPPKENYI LVRARRGRAT SCHSLAERVR REKISKRMSL 240 LQELVPGCNK ITGKTVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNIDI DRILAKDILG 300 SRDRNRSMFR LNAVMNPLPP FGIIQGTIPN LLTTNPQLDP APQVKVIMGR VSEFFGIFQN 360 RCHILGADSG QISRFSDYQI NLRFQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDGEIGSKHG DETGISEVDM ISMPFYTKAD PFFPSADWDH VVSAMVSSNG LSSSHCISLV  60
TDNQEMSSSF AHYESGSGSG YLDISTSLRP YRNMPECNQT AHCLGSDKKG ESEGRLMRTG  120
EEVHEGHQVS EDGVLGASPC RKRLQLETKM VPSLQWNKKA VEESRKDDQI EDQRQKKTES  180
ERNMVEDSGA KKPTNKKNSG SREPPKENYI LVRARRGRAT SCHSLAERVR REKISKRMSL  240
LQELVPGCNK ITGKTVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNIDI DRILAKDILG  300
SRDRNRSMFR LNAVMNPLPP FGIIQGTIPN LLTTNPQLDP APQVKVIMGR VSEFFGIFQN  360
RCHILGADSG QISRFSDYQI NLRFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553662.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553662.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Swissprot	Q6NKN9	1e-122	BH074_ARATH; Transcription factor bHLH74
TrEMBL	R0I6X0	1e-124	R0I6X0_9BRAS; Uncharacterized protein
STRING	XP_010553662.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-124	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]