PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553700.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 590aa    MW: 64365 Da    PI: 5.9474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.6e-16396442455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+e+IksLq
  XP_010553700.1 396 VHNLSERRRRDRINEKMRVLQELIPNC-----NKVDKASMLDEAIEHIKSLQ 442
                     5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-20390450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20395465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-16395446No hitNo description
PfamPF000109.1E-14396442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-17398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MPLFELLGLT EAKLESSQEK KSSVHEDDLV ELVWENGQIA MQSQSSKSRN SQACTNSIPR  60
AVQSNTSRAK EIGNGSDARI VSPLNEIPIS VPLLGPGLSQ DDDLVPWLNQ PLDESLQTGY  120
CSDFFPDVSE VTVIEPEDDV TRNQSLANSQ SVSVHDESTR YGRGTSQSSS SRSNLFQEPS  180
PLYQIDRARN VQTVCEESCC LSQKQLPELP SNKLGLVNFS HYSRPAMLAK ANLHGSGVVT  240
TREMGSTSSA AATSGRDHVE TRLLESGNKL RGEKSFHSAK VPGDGVLNLS VASDPAKFVA  300
SGSSSKGNEK VCHILGNSCG RDQPSEMAEE SYSLRSGNNS LEEHYDGPSR SLNRQQLDAR  360
DMTIREQDIE EESIDARKAA PLRAGSGFKR SRSAEVHNLS ERRRRDRINE KMRVLQELIP  420
NCNKVDKASM LDEAIEHIKS LQLQIQIMSM ASGYYMPGMQ PIHPAMQMPR YPEMATGMGM  480
NYGMGITPDM SCVSPRVPMV QVLPQFQASG LQPLSRPDVS MARVPGGLVT GSRSEIHGSA  540
VTETGKVTDP TKETGSKDEV KNKSLKPLQS SCSCSDVLTK QVYDHVCGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400405ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553700.10.0PREDICTED: transcription factor PIF3-like
STRINGXP_010553700.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-117phytochrome interacting factor 3