PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553759.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 311aa    MW: 33494.1 Da    PI: 7.0119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10159203554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L   v+Y+k L
  XP_010553759.1 159 HSIAERLRRERIAERMKALQELVPTC-----NKTDRAAMLDDIVDYVKFL 203
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-15152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.87E-11152208No hitNo description
PROSITE profilePS5088816.539154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15156214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAGNHHKQDG IGDEFFEQIL GVPPGYGGRG GEIGSSSSSM PMMLQLASGG GGFRGLGMGG  60
MMGLGLNLEH HGLLGAVGNS NDSDNATSII NERETLQMTG HFPAYGHLQS PAVRPRPPPQ  120
LHQQHFHGHP LPGTAAPAAN QPTIRPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL  180
VPTCNKTDRA AMLDDIVDYV KFLRLQVKVL STSRLGATGA VAQLVAGVPL SSVKGDDGGA  240
SEPMWEKWTG DGTEEQVAKL MEEEVGAAMQ FLQSKELCIM PISLASTIFN THLRPSDQQP  300
MIPKPEMNHL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553759.10.0PREDICTED: transcription factor bHLH7-like isoform X1
SwissprotQ93Y003e-72BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A2C9VCK21e-115A0A2C9VCK2_MANES; Uncharacterized protein
STRINGXP_010553759.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.24e-67bHLH family protein