PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010553948.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 272aa MW: 30669.1 Da PI: 7.6994

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010553948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.8	1.6e-17	15	64	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++L +l+P++ ++K +Ka+ L +++eYI+ Lq XP_010553948.1 15 RSKHSETEQRRRSKINERFQTLMDLIPQN----DQKRDKASFLLEVIEYIRFLQ 64 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-22	11	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-19	12	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.882	13	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-15	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-15	15	68	No hit	No description
SMART	SM00353	6.8E-13	19	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSMWEVTKRK TSTYRSKHSE TEQRRRSKIN ERFQTLMDLI PQNDQKRDKA SFLLEVIEYI 60 RFLQEKLQMH ESSQQMWNQG PTKLIPWRNN HRPAEDVSDH SQSIKSWSSH EKGVAPPEML 120 ADMQNSLDAD VDSTAVFRSL NQNPTSGVPY YVPADPSLQF VQQDSCQVRH SSGSAVCSMS 180 EPSNSKDKTS VGLSKAYSQG VLSTLTEALK SSSVNLSETM ISVQLSLAKS SDPEASASVD 240 SANGNRDREM GSQAETKSFY EESKHAQKRI RQ

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010553948.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010553948.1	0.0	PREDICTED: transcription factor BIM3-like isoform X2
Swissprot	Q9FMB6	4e-92	BIM3_ARATH; Transcription factor BIM3
TrEMBL	V4NL63	4e-90	V4NL63_EUTSA; Uncharacterized protein
STRING	XP_010553947.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	2e-94	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]