PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554012.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27129.2 Da    PI: 5.0554
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-1865117456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++t+eq++ Le+ F++++++   ++ +LAk+lgL+ rqV vWFqNrRa+ k
  XP_010554012.1  65 KHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSK 117
                     5679***********************************************98 PP
2HD-ZIP_I/II113.41.4e-3663153191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     e+k+rl++eqv+lLE++F+ee+kLep rK++la++Lgl prqvavWFqnrRAR k kq+Ek+y+ Lk+ yd+l+e++e + + +e+L++e+
  XP_010554012.1  63 ERKHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSKVKQIEKQYDLLKSLYDSLREKHELVLEANEKLKAEV 153
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1854120IPR009057Homeodomain-like
PROSITE profilePS5007117.03859119IPR001356Homeobox domain
SMARTSM003892.9E-1563123IPR001356Homeobox domain
CDDcd000865.95E-1564120No hitNo description
PfamPF000465.1E-1665117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1965126IPR009057Homeodomain-like
PRINTSPR000313.5E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000313.5E-699115IPR000047Helix-turn-helix motif
PfamPF021837.0E-10119161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDSGWLSVDR SGSRVNLHSP ENLSLILPGY STVMDMDESS KRGFSTISGH SFNRKYCDHS  60
AYERKHRLTA EQVNLLEKNF QEENKLEPLR KSQLAKNLGL PPRQVAVWFQ NRRARSKVKQ  120
IEKQYDLLKS LYDSLREKHE LVLEANEKLK AEVLTLTEKL QASGIDSQPT NNQNARSFPN  180
DPEEKPDETM SSSAALNPAA DDEDNFSDVF MAAEQQTNDE PFDWWVWQSI SQPLWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARSKVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554012.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022832e-38HAT5_ARATH; Homeobox-leucine zipper protein HAT5
STRINGXP_010554012.11e-175(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-41homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]