PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554014.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23559.2 Da    PI: 5.026
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-193284456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++t+eq++ Le+ F++++++   ++ +LAk+lgL+ rqV vWFqNrRa+ k
  XP_010554014.1 32 KHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSK 84
                    5679***********************************************98 PP
2HD-ZIP_I/II113.41.4e-3630120191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     e+k+rl++eqv+lLE++F+ee+kLep rK++la++Lgl prqvavWFqnrRAR k kq+Ek+y+ Lk+ yd+l+e++e + + +e+L++e+
  XP_010554014.1  30 ERKHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSKVKQIEKQYDLLKSLYDSLREKHELVLEANEKLKAEV 120
                     69*************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-182287IPR009057Homeodomain-like
PROSITE profilePS5007117.0382686IPR001356Homeobox domain
SMARTSM003892.9E-153090IPR001356Homeobox domain
CDDcd000862.37E-143187No hitNo description
Gene3DG3DSA:1.10.10.601.2E-193293IPR009057Homeodomain-like
PfamPF000463.9E-163284IPR001356Homeobox domain
PRINTSPR000312.8E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000312.8E-66682IPR000047Helix-turn-helix motif
PfamPF021835.5E-1086128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDMDESSKRG FSTISGHSFN RKYCDHSAYE RKHRLTAEQV NLLEKNFQEE NKLEPLRKSQ  60
LAKNLGLPPR QVAVWFQNRR ARSKVKQIEK QYDLLKSLYD SLREKHELVL EANEKLKAEV  120
LTLTEKLQAS GIDSQPTNNQ NARSFPNDPE EKPDETMSSS AALNPAADDE DNFSDVFMAA  180
EQQTNDEPFD WWVWQSISQP LWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARSKVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554014.11e-150PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
SwissprotQ022831e-37HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1J3EYU02e-51A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5
STRINGXP_010554012.11e-148(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-40homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]