PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554352.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 680aa    MW: 76819.8 Da    PI: 5.1459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.9e-07115137427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G C  GdrC F H+p
  XP_010554352.1 115 VPCVFFQK-GMCIKGDRCAFVHVP 137
                     69******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033059IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183158IPR000571Zinc finger, CCCH-type
PfamPF156633.0E-113185No hitNo description
PROSITE profilePS5010310.1276187IPR000571Zinc finger, CCCH-type
SMARTSM003560.916386IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDRIMSAPAT QQQQPQKQPA AAATAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSEYA  60
RVNPRDCYYW LNGNCLNHKC GFRHPPLDGL LGNQGGTPAG PSPAQAPLSA GKQAVPCVFF  120
QKGMCIKGDR CAFVHVPIPA TNKMQQQPME PAPSSEPQSS KKPFEKVTEE KKFPSANLSK  180
GAAPKVTNSG RGDSRRVERY VPQHRGFETV GQKKAVGVPL FTGGSHSTQL LQAHGSDDKI  240
SFQNDNEPND VLREASPGVD VGEDFDVLVD NELRDSECYH GEDRYGRRGQ DGRNSVNEYH  300
PDFNDVPDGD AEAYRGFDRY NHMQDRQYAW DHPRASAERE DHLERRVYST DEKSDHIPES  360
DLRHRLSKHR RGNGPISDVG CEDGPDYSER GFADPRKDPL QESFISSRLQ GRIKLPGRVN  420
GGDGHFERGS RWGRNRSQLS PGRQGRFRDR IRGNVEENHC NDQERVTTCP PWMRRREMED  480
ERNYDFPAPK RLAELRSRKE ESKAERSHRK RKSSEDHRRQ ESHDSFVAPL PLSEILKRKR  540
AAVTEKNGMI QETKPEYRDA ITITKEEGGH ESKLAVEDKP ELGHDQSSEP QQTHEAEMTD  600
EGTMAEDQAY EGMAEDQTYE GDDPNGEYYY EQGYEEDGEY NYEEGENAEE DYAGGVDVEG  660
GEAGEEDGGN EFAKKIDVML
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019059200.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like, partial
SwissprotQ9ZUM00.0C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBLV4K6A20.0V4K6A2_EUTSA; Uncharacterized protein
STRINGXP_010554352.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215
Publications ? help Back to Top
  1. Seok HY, et al.
    AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis.
    Plant Cell Physiol., 2016. 57(3): p. 603-15
    [PMID:26858286]
  2. Seok HY, et al.
    Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959
    [PMID:29548822]