PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554354.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 288aa    MW: 31859.4 Da    PI: 9.8405
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3344.1e-102112881301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mdddg+  rn+gyyepa ++k +lglqlmssi er++k+    r+ n+ + ++++++++rd         m++     ++++       +++ ++
  XP_010554354.1  11 MDDDGF--RNWGYYEPA-NFKGDLGLQLMSSI-ERNTKPflpgRDPNV-MVGPNGSYHPRDcpvpespipMNY----GWINQ-------QKDYFF 89 
                     99**99..9********.**************.9**************.************999999999999....99999.......88999* PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ++l+v+       p++++vl++t+ + s+q      l++       ++ +ea p+  ++e+ ++kk+k  ++++   k kk +k+k+    +   
  XP_010554354.1  90 NMLPVNP------PNYSNVLPETSGAPSMQI-----LRPAVS----SSRVEASPVPGEEEVPQNKKRKPGGASKGGSKPKKPRKPKND---N--G 164
                     ***9765......99************9999.....333333....344555666665555555555555566666666666666662...2..2 PP

       GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                     ++++++ +r+k  kks+d+v+ngvs+D+s+l vPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekL
  XP_010554354.1 165 NEHNGNVQRVKPAKKSMDVVINGVSMDISGLSVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKL 259
                     2233333799************************************************************************************* PP

       GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aaeGy+++np+DLk+hWA+HGtnkfvtir
  XP_010554354.1 260 AAEGYNFANPIDLKSHWARHGTNKFVTIR 288
                     ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-9711288IPR010409GAGA-binding transcriptional activator
SMARTSM012263.7E-16411288IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDLFDCSFLL MDDDGFRNWG YYEPANFKGD LGLQLMSSIE RNTKPFLPGR DPNVMVGPNG  60
SYHPRDCPVP ESPIPMNYGW INQQKDYFFN MLPVNPPNYS NVLPETSGAP SMQILRPAVS  120
SSRVEASPVP GEEEVPQNKK RKPGGASKGG SKPKKPRKPK NDNGNEHNGN VQRVKPAKKS  180
MDVVINGVSM DISGLSVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA  240
RISGRKMSQG AFKKVLEKLA AEGYNFANPI DLKSHWARHG TNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554354.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1
SwissprotQ9LDE21e-137BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1J3GH631e-145A0A1J3GH63_NOCCA; Protein BASIC PENTACYSTEINE2
STRINGXP_010554354.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-135basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]