PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554360.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 691aa    MW: 77664.6 Da    PI: 5.0956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-07115137427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G C  GdrC F H+p
  XP_010554360.1 115 VPCVFFQK-GMCIKGDRCAFVHVP 137
                     69******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033059IPR000571Zinc finger, CCCH-type
PfamPF156639.2E-113185No hitNo description
SMARTSM003560.00183158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.926187IPR000571Zinc finger, CCCH-type
SMARTSM003561.46386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995111138IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5111137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDRTMFAPAT QQQQPQKQPA GAATAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSEYA  60
RVNPRDCYYW LNGNCLNFKC GFRHPPLDGL LGNQGGAPTG PSHAQAPLSA GKQAVPCVFF  120
QKGMCIKGDR CAFVHVPVPA ANKMQQQPVE TAPATEPQSS KKPFQKVTEV KKFPSANLSK  180
AVKAHVDKGA TPKVTDAGLG DSRRVERYVP HHVGYDYETV GQKKAVGVPL FTGGGHSTPL  240
LKTHGSDDNI SFQNGNDPND VLRESSPGFD AGEDFDVLVD NELRDSEYYH GDDRYGRRAQ  300
DGRNSVNEYH PDFNAVPDVD AEAYRGFDRY NHTQDRQYAW DHHRASAERG DNLEGRVYLT  360
DEMPDHVPES DLRHRLSKHR RGNGPRSDVG CEDAPDYSER GFADSHNDPL QESFISSRLQ  420
GRIKLPGRVN SGDAHFERGI RWGRNRSQLS PGRQGRFQDR IRGSVEENHC NDEERGTPCP  480
PWMRRREMED ERNSDFPAPK RLAELRSRKE ESKAERSHRK RKSSEDHRRQ ESHDSFVAPL  540
PLSEILKRKR AAVTEKNGVI QETKQEDRDA TTIAKEEGGH EPKPAVEDKP ELGHDQSSEP  600
QQTHEPEKTD EGTMAEDQAY EGMAEDQAYE GDDPNGEYYY EQGYEEDGEY NYEEGENAEV  660
EYAEGGADVE GGEEGEEDGG NEFAKKIDVM F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554360.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
SwissprotQ9ZUM00.0C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBLV4K6A20.0V4K6A2_EUTSA; Uncharacterized protein
STRINGXP_010554360.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215
Publications ? help Back to Top
  1. Seok HY, et al.
    AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis.
    Plant Cell Physiol., 2016. 57(3): p. 603-15
    [PMID:26858286]
  2. Seok HY, et al.
    Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959
    [PMID:29548822]