PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554370.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 278aa    MW: 30898.3 Da    PI: 10.0847
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3413e-10412781301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mdddg+  rn+gyyepa ++k +lglqlmssi er++k+    r+ nl ++++++++++rd         m++     ++++       +++k++
  XP_010554370.1   1 MDDDGF--RNWGYYEPA-NFKGHLGLQLMSSI-ERNTKPflpgRDPNL-MIGPNGSYHPRDcvvsetpipMNY----GWINQ-------QKDKFF 79 
                     99**99..9********.**************.9**************.************999999999999....89999.......899*** PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke.kkakkkkkksekskk 176
                     ++l+v+       p++++vl++t+ + s+q      l+++    r ee  +  p +e+ +++k++k      ++++pk  +k kk++k    +k+
  XP_010554370.1  80 NMLPVNP------PSYSNVLPETSGAPSMQI-----LHPPVSSSRVEE--DPVPGQEEIPQTKKRKPAG---SGSNPKGhSKPKKPRK----PKD 154
                     ****765......899*************99.....333333322222..3334344444444444444...3444443033333333....434 PP

       GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                     +  +e+  +r+k  kks d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+Lek
  XP_010554370.1 155 NDGNEHI-QRVKPAKKSFDVVINGVSMDISSLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEK 248
                     4444444.79************************************************************************************* PP

       GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     LaaeG+++s p+DLk+hWA+HGtnkfvtir
  XP_010554370.1 249 LAAEGFNFSSPIDLKSHWARHGTNKFVTIR 278
                     *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.7E-991278IPR010409GAGA-binding transcriptional activator
SMARTSM012265.6E-1661278IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPANFKGH LGLQLMSSIE RNTKPFLPGR DPNLMIGPNG SYHPRDCVVS  60
ETPIPMNYGW INQQKDKFFN MLPVNPPSYS NVLPETSGAP SMQILHPPVS SSRVEEDPVP  120
GQEEIPQTKK RKPAGSGSNP KGHSKPKKPR KPKDNDGNEH IQRVKPAKKS FDVVINGVSM  180
DISSLPVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA RISGRKMSQG  240
AFKKVLEKLA AEGFNFSSPI DLKSHWARHG TNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554370.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_010554371.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-140BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1J3CP141e-144A0A1J3CP14_NOCCA; Protein BASIC PENTACYSTEINE2
TrEMBLA0A1J3GH631e-144A0A1J3GH63_NOCCA; Protein BASIC PENTACYSTEINE2
STRINGXP_010554370.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-142basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]