PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554450.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 466aa    MW: 51929.6 Da    PI: 6.263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13319365455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_010554450.1 319 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDLQ 365
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-4248227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-18315381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.609315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.87E-15318369No hitNo description
PfamPF000101.8E-10319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17319380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-15321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGHKFWENQE DRAVVESIIG SEACEFLISS ASNSSLSKLV VPPNDPNLQQ GLRHVVEGSD  60
WDYAIFWLAS SLSNSDGCLL IWGDGHCRAP KGKRGISNDV DPKQEEVKRL ALQKLHMSFG  120
GSDHDNSMAQ LEGVTDLEMF FLASMYFSFR CESAKYGPAG IYTTGKPLWA ADLPSCLNYY  180
RVRSFLSRSA GFETVLSVPV KSGVVELGSF RTIPEDKSVI EMVKAVFGAA DPIQTKAAPK  240
IFGRELSLGG SKPQTMSINF SPKMEDDSGF SLESYDAIGG SNQVYGYEQG KYDVLCLTDE  300
QKPRKRGRKP ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY  360
ITDLQKKIRV FETEKQIMNR REINQTPPAE IDFQQRQDDA VVRLSCPLET HPVSKVIQAF  420
RENQVTAHDS NVTATEDCMV HTFSVRAQDG VTAEQLKEKL AASFSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-27313382272Transcription factor MYC2
5gnj_B8e-27313382272Transcription factor MYC2
5gnj_E8e-27313382272Transcription factor MYC2
5gnj_F8e-27313382272Transcription factor MYC2
5gnj_G8e-27313382272Transcription factor MYC2
5gnj_I8e-27313382272Transcription factor MYC2
5gnj_M8e-27313382272Transcription factor MYC2
5gnj_N8e-27313382272Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554450.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A178V6530.0A0A178V653_ARATH; JAM3
STRINGXP_010554450.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]