PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554483.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 199aa MW: 21421.1 Da PI: 9.5858

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	183.8	7e-57	35	181	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaesk 97 ++ C dCGn+akk+Ca+ RCRtCCksrg+dCathvkstWvpa++rr+r+ + a a s + s sk++r++ ++++++a + l++++s+ XP_010554483.1 35 EEKVCGDCGNRAKKECAFGRCRTCCKSRGYDCATHVKSTWVPASQRRDRKFTVAGAVSGSGPSC--PGSKKQRTEvSEQNNAAKAPLGLQTSSSH 127 6789*******************************************999999887776654..44444444413444555555556666555 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++ + lP +v+++avfr++rv+++ +ge+e+aYq++v+i+GhvfkG+Ly++G XP_010554483.1 128 QGFK-EALPGKVQAPAVFRRIRVTAITNGEAEVAYQATVTISGHVFKGFLYNYGG 181 5555.55*******************************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-52	37	180	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.3E-26	38	80	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.9E-26	134	180	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MLRFRNLMLI SSPPPQPPST DSLSENLEND LSGAEEKVCG DCGNRAKKEC AFGRCRTCCK 60 SRGYDCATHV KSTWVPASQR RDRKFTVAGA VSGSGPSCPG SKKQRTEVSE QNNAAKAPLG 120 LQTSSSHQGF KEALPGKVQA PAVFRRIRVT AITNGEAEVA YQATVTISGH VFKGFLYNYG 180 GVDQNNPLPR ASSKLPTEN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554483.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554483.1	1e-147	PREDICTED: protein SHI RELATED SEQUENCE 6
Refseq	XP_010554484.1	1e-147	PREDICTED: protein SHI RELATED SEQUENCE 6
Refseq	XP_010554486.1	1e-147	PREDICTED: protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	5e-57	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A0D2VQ14	1e-55	A0A0D2VQ14_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KFQ4	1e-55	A0A1U8KFQ4_GOSHI; protein SHI RELATED SEQUENCE 6-like
STRING	XP_010554483.1	1e-147	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	3e-55	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]