PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554540.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 140aa    MW: 15189.9 Da    PI: 4.6811
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.51.5e-5618115198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdr lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfedy+epl++yl++yreleg
  XP_010554540.1  18 VREQDRSLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLRIYLQRYRELEG 112
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_010554540.1 113 DNK 115
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5316126IPR009072Histone-fold
SuperFamilySSF471132.64E-4121131IPR009072Histone-fold
PfamPF008087.9E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.6E-215270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.6E-217189No hitNo description
PRINTSPR006154.6E-2190108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDTPTSPAGD GGESGGSVRE QDRSLPIANI SRIMKKALPP NGKIGKDAKD TVQECVSEFI  60
SFITSEASDK CQKEKRKTVN GDDLLWAMAT LGFEDYLEPL RIYLQRYREL EGDNKGSAKG  120
GDSSNRDGAG GFPGQDMPSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-4717109294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4717109294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554540.11e-99PREDICTED: nuclear transcription factor Y subunit B-1
RefseqXP_010554541.11e-99PREDICTED: nuclear transcription factor Y subunit B-1
RefseqXP_019059293.11e-99PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ9SLG04e-90NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA6XB861e-87A6XB86_ARATH; Transcription factor subunit NF-YB1
TrEMBLD7LCC91e-87D7LCC9_ARALL; Uncharacterized protein
STRINGXP_010554540.14e-99(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.52e-92nuclear factor Y, subunit B1