PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554689.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 178aa MW: 19744.3 Da PI: 6.3594

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.3e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r d+++slvyeA ar+rdPvyG+vg i+ lq+q++ql+ +la XP_010554689.1 8 PCASCKLLRRRCAEDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHHRADTVNSLVYEAGARVRDPVYGCVGAISYLQNQVQQLQMQLA 102 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010554689.1 103 VAQAE 107 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.578	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGGNGSSPCA SCKLLRRRCA EDCIFAPYFP SDDPHKFAIV HKVFGASNVS KMLQELPVHH 60 RADTVNSLVY EAGARVRDPV YGCVGAISYL QNQVQQLQMQ LAVAQAEILC IQMQHEPLLH 120 APTLHLPSED DDDKSSFLLH NDFSHHHDLG FSPSSPRDNI TFQGSLKTEG IFGHEMFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554689.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554689.1	1e-131	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-77	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2P6SLE9	4e-86	A0A2P6SLE9_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_010554689.1	1e-130	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-66	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]