PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554704.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 219aa MW: 24117.7 Da PI: 8.7237

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.4e-41	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ ela XP_010554704.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQIELA 139 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++++e XP_010554704.1 140 SIRTE 144 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.435	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	45	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSSRERERFD EEIGKKIRRE ADAWIQMAGR RQMAFPPGAL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQALQIELAS IRTEILKYKQ REAVTMMPSN SQVALLSSGA VSVVAPPPQT 180 PPTPPPLPPP PSSSVFSQPI TVRPLEYGDI ASENSPYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	45	152	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	45	152	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554704.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010554704.1	1e-160	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-100	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A087H476	1e-110	A0A087H476_ARAAL; Uncharacterized protein
STRING	XP_010554704.1	1e-159	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-91	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]