PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554713.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 521aa MW: 57819.4 Da PI: 8.3029

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	302	360	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A+rs +RK +i eLe+kv+ L++e ++L +l+ + l se+ XP_010554713.1 302 KRAKRIIANRQSATRSKERKARYILELERKVQILQTEATTLSAQLSLFQRDTNGLSSEN 360 9*****************************************99998887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-16	298	362	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	300	363	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-9	302	360	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.75E-10	302	353	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.6E-10	302	357	No hit	No description
CDD	cd14703	9.20E-21	303	352	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MPLYVCTLQF FETRSYFGGE CNCHGRSLGK ARNPGWGCDR EQALQIMIQE LSLKSNLVRC 60 LRMSVVKSLL KVIEKFPHVK HYREFKVPLA LELDVRDLVK SHFGVSYFDS ILLAMAMCSH 120 PQMNRILSCS RDRGSDGTGM EDPSNPKPNP SNHHLPQCPT PPPANPGAAA PAPAPFRGPY 180 HRRAHSEVQF RLPEDLELSD PFGGFDDLGS ADDLFCSYMD IEKLGSRSTS ASASDSAGPS 240 APRPDNLVPV ENEGGGRDDA RNSKPRHRHS LSVDGSSTLD SIEAKKAMAP DKLAELWVVD 300 PKRAKRIIAN RQSATRSKER KARYILELER KVQILQTEAT TLSAQLSLFQ RDTNGLSSEN 360 TELKLRLQAM EQQAKLRDAL NEALKKEVER LKSATGEMSR SDAYNLGIAM GCMQYPQSFF 420 QRQPQESQSD AHNLRMPPQF LLFQPNNRMP NSNIITSSSS RPLPSAHQPM LVTASGQSHS 480 FSEAMKQDPL GRLEDLDIGS CGRVSSCFRR SDSVSESSSA M

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MPLYVCTLQF FETRSYFGGE CNCHGRSLGK ARNPGWGCDR EQALQIMIQE LSLKSNLVRC  60
LRMSVVKSLL KVIEKFPHVK HYREFKVPLA LELDVRDLVK SHFGVSYFDS ILLAMAMCSH  120
PQMNRILSCS RDRGSDGTGM EDPSNPKPNP SNHHLPQCPT PPPANPGAAA PAPAPFRGPY  180
HRRAHSEVQF RLPEDLELSD PFGGFDDLGS ADDLFCSYMD IEKLGSRSTS ASASDSAGPS  240
APRPDNLVPV ENEGGGRDDA RNSKPRHRHS LSVDGSSTLD SIEAKKAMAP DKLAELWVVD  300
PKRAKRIIAN RQSATRSKER KARYILELER KVQILQTEAT TLSAQLSLFQ RDTNGLSSEN  360
TELKLRLQAM EQQAKLRDAL NEALKKEVER LKSATGEMSR SDAYNLGIAM GCMQYPQSFF  420
QRQPQESQSD AHNLRMPPQF LLFQPNNRMP NSNIITSSSS RPLPSAHQPM LVTASGQSHS  480
FSEAMKQDPL GRLEDLDIGS CGRVSSCFRR SDSVSESSSA M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059356.1	0.0	PREDICTED: transcription factor RF2b-like isoform X2
Swissprot	O22873	1e-167	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A178VZR1	1e-165	A0A178VZR1_ARATH; Uncharacterized protein
STRING	XP_010554713.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-143	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]