PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554819.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 30149.8 Da    PI: 5.6529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n   r v fskRrng++KKA ELS+LCdaevavi+fsstgk+y++ss
  XP_010554819.1  9 KRIDNVNSRLVRFSKRRNGLMKKARELSILCDAEVAVIVFSSTGKVYDFSS 59
                    79***********************************************96 PP
2K-box578.5e-201011821899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++++ Lk+e+e L  +  ++ G +L+ Ls++eL +Le+qL+++l +i+++K+++ll+qie+++ +ek++ een++Lrk+le
  XP_010554819.1 101 SEDSDSLKSELERLHLSYERMNGRELDGLSFQELLSLENQLNEALLNIKDRKTQVLLNQIERSRLQEKKALEENERLRKQLE 182
                     68899**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.165161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.06E-37279No hitNo description
SuperFamilySSF554559.81E-30285IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.30997187IPR002487Transcription factor, K-box
PfamPF014862.8E-16101181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRGKTEIKR IDNVNSRLVR FSKRRNGLMK KARELSILCD AEVAVIVFSS TGKVYDFSSS  60
SMHQTLSRYG YSSVSSDHWE QPQLLQHQQP HPSLFQDIDA SEDSDSLKSE LERLHLSYER  120
MNGRELDGLS FQELLSLENQ LNEALLNIKD RKTQVLLNQI ERSRLQEKKA LEENERLRKQ  180
LEMFEGSSEP LELTAVNTEL HILASFPLLG RGMEGKSSSL DDDNDSDDHH SDTTLQLGLP  240
SEYNRKKKIP KIEPACDSSG SQVCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17169169MEF2C
5f28_B1e-17169169MEF2C
5f28_C1e-17169169MEF2C
5f28_D1e-17169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554819.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554819.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K82e-87AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A087GYM29e-94A0A087GYM2_ARAAL; Uncharacterized protein
STRINGXP_010554818.11e-165(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.16e-60AGAMOUS-like 18