PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554824.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 212aa    MW: 24825.8 Da    PI: 5.1172
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+e++++isw+++g+sfvv+++ ef++++Lpk Fkh nf+SFvRQLn+YgF+kv+  +         weF +k F+kg++ell++
  XP_010554824.1  30 FLVKTYAVVEDPETDDVISWNDDGTSFVVWQPPEFSRDLLPKLFKHCNFSSFVRQLNTYGFRKVSAGR---------WEFWNKMFRKGQRELLCN 115
                     9****************************************************************988.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+rkk 
  XP_010554824.1 116 IRRKKA 121
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3825119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.52E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5726119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEQSAVPAEE EEEGEEEWMV RRSEQSPPPF LVKTYAVVED PETDDVISWN DDGTSFVVWQ  60
PPEFSRDLLP KLFKHCNFSS FVRQLNTYGF RKVSAGRWEF WNKMFRKGQR ELLCNIRRKK  120
AHPHHACDPT TSTPPRRDDQ RSSSSASSLS SYSNLLDENK RLRKEHGFLT TELAMTKMKC  180
KELLELTERY KTTPEEEEEE EDGLKLFGVK LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B7e-23281193105Heat shock factor protein 2
5d8l_B7e-23281193105Heat shock factor protein 2
5d8l_D7e-23281193105Heat shock factor protein 2
5d8l_F7e-23281193105Heat shock factor protein 2
5d8l_H7e-23281193105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554824.11e-157PREDICTED: heat stress transcription factor B-3
SwissprotO222302e-74HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0D3B6A01e-79A0A0D3B6A0_BRAOL; Uncharacterized protein
STRINGXP_010554825.11e-156(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-70heat shock transcription factor B3