PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554849.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 374aa    MW: 41644.6 Da    PI: 8.3248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12297342655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + +++L +AveYIk+Lq
  XP_010554849.1 297 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKDLQ 342
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-14294348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-11295344No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13296355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDSSTHRHVS DPNHLYTGSG LLRFRSAPSS LLATFSDDEK GGSDSDRLIS RFVSSDGGNG  60
DLGSPDLSEF EDKSPVSAAE AAVAYVSAPP PSYSALPPHY PRQQSKGITS SVAMDGSYQF  120
LGMIHHQSKP VGSNLVRQSS SPAGMFNNLS IQNGYGSFRS LLNYGAEEEQ SQSPNGLKRH  180
RSLASRPPSL TRMLSQISEI GTETISANFQ YGHWNDPSSF MENFSMKRES VDDDEGKLFS  240
GAQNGETGDR MHLLSHSLSL PKRSELDMVR VDKYLQFQDS VPCKIRAKRG CATHPRSIAE  300
RVRRTRISER MRKLQELVPN MDKQTNTSDM LDLAVEYIKD LQRQFKVKTL LQQMQILSET  360
RAHCKCFNKE EKAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554849.10.0PREDICTED: transcription factor bHLH130-like isoform X1
SwissprotQ66GR31e-164BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1J3EZD01e-173A0A1J3EZD0_NOCCA; Uncharacterized protein
STRINGXP_010554849.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-150bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]