PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554981.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 281aa    MW: 31464.3 Da    PI: 6.5691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-102042441055
                     HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+ +      K++ +++Le+Av+Y+k Lq
  XP_010554981.1 204 RKRRERINERLRILQSLVPNgN------KVDISTMLEEAVHYVKFLQ 244
                     9*******************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14196258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12199252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-12203248No hitNo description
PfamPF000101.2E-7204244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDSFAVSEFL DHSLFQGGGN DGFSPYSEAE TGTAKPPHEE NLLCSLHHNP KTDLNPISQR  60
CSHYSVNTAD PSASFHDVSK CFLSGFDQIH GQNSVFFPTG IANPHDVDAM CSHVGGAVDM  120
CNGLALEKEM PVKRKFYVHE KNVLDPSENV TRNRIRVTRD VGSEGQSSSS YSSEEEHFGQ  180
ETKPCLATRA ARGSATDPQS LYARKRRERI NERLRILQSL VPNGNKVDIS TMLEEAVHYV  240
KFLQLQIKLL SSDDLWMYAP LAYNGFDMGL HMKIFSQFMR K
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554981.10.0PREDICTED: transcription factor bHLH83-like
TrEMBLA0A067KZM44e-54A0A067KZM4_JATCU; Uncharacterized protein
STRINGXP_010554981.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.18e-41root hair defective 6-like 4