PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555001.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 289aa    MW: 32913.5 Da    PI: 7.2514
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.41.1e-25193246155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ W+++LH++F++av+qL G +kA+Pk+ile+m+ ++L +e+v+SHLQkYR+
  XP_010555001.1 193 KRRVIWSTDLHRQFLDAVNQL-GVDKAVPKKILEIMNDESLRRENVASHLQKYRM 246
                     689******************.********************************8 PP
2Response_reg54.66.2e-19351441110
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd++p  +  +++ l++ +y +v+ +    +al ll+ ++  +D+ ++D++  + + ++++++ir+e  ++pii++++ ++ e ++e ++ G
  XP_010555001.1  35 VLVVDEDPHYLLTMENQLKEFKY-QVTKCNGLAAALSLLRGSKnsCDIAIVDVQDLNAERSKIFSQIRSET-DIPIIIMSSDDSVESVIEGVRNG 127
                     89*********************.***************777777************************98.*********************** PP

                     ESEEEESS--HHHHHHH CS
    Response_reg  94 akdflsKpfdpeelvka 110
                     a d+l+Kp+ pe l++ 
  XP_010555001.1 128 ACDYLVKPIRPEVLRTI 144
                     ************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.11E-2431154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-2532161No hitNo description
SMARTSM004489.6E-1533145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.4234149IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-1435144IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.38E-1736149No hitNo description
Gene3DG3DSA:1.10.10.607.5E-27191250IPR009057Homeodomain-like
SuperFamilySSF466893.23E-17191250IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-23193246IPR006447Myb domain, plants
PfamPF002496.7E-6198245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTDQASVASS SPPNTVARFV KFGVFHGEFP EGLRVLVVDE DPHYLLTMEN QLKEFKYQVT  60
KCNGLAAALS LLRGSKNSCD IAIVDVQDLN AERSKIFSQI RSETDIPIII MSSDDSVESV  120
IEGVRNGACD YLVKPIRPEV LRTIYKHVAK KVLERAEEEE KGETSSSCFT NPRKKVLDEG  180
HDSDHVHGRV SKKRRVIWST DLHRQFLDAV NQLGVDKAVP KKILEIMNDE SLRRENVASH  240
LQKYRMYLKR QEEEKENMKR PLSCPPDRNY YPAPPCLSEN TSTMMHQNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-19192250462ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194RKKVLDEGHDSDHVHGRVSKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555001.10.0PREDICTED: putative two-component response regulator-like APRR4, partial
SwissprotQ9FJ163e-64APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M49e-80A0A087G9M4_ARAAL; Uncharacterized protein
STRINGXP_010555001.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.16e-55pseudo-response regulator 4