PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555019.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YA

Protein Properties

Length: 261aa MW: 28652.6 Da PI: 8.1205

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.5	7e-31	169	225	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e e+k +k rkpylheSRh+hA+rRpR+sgGrF XP_010555019.1 169 QEPVYVNAKQYEGILRRRKARAKAELERKA-IKDRKPYLHESRHRHAMRRPRASGGRF 225 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-33	167	228	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.974	168	228	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-27	170	225	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.6E-24	171	193	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	173	193	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.6E-24	202	225	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MQSKLGGGNE AESNSHVVPH PMMYQEPWWR NNAFGTVSQA RTTAIPSNSS SLDCSNGSES 60 NDVQSESEDG ALNGGTCKDS QAATSVRSEN RGHDGNDMAH MSSSMSAMHD QQLAQPPELV 120 GHYIACVSNP YRDPYYGGMM GAYGHQPLGF PPYVGMPRER TALPLDMTQE PVYVNAKQYE 180 GILRRRKARA KAELERKAIK DRKPYLHESR HRHAMRRPRA SGGRFAKKSE VEGSETASKE 240 RETGSAESHS ATNSSGSEPR P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-17	168	225	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	218	RHRHAMRRPR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555019.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787677	6e-41	KC787677.1 Brassica napus transcription factor subunit NF-YA1A (NF-YA1A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555019.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
Swissprot	Q9LXV5	1e-133	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	V4LFM5	1e-138	V4LFM5_EUTSA; Uncharacterized protein
STRING	XP_010555018.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	1e-104	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]