PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555162.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 794aa MW: 90760.3 Da PI: 6.6027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.1	1.2e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p XP_010555162.1 89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVKEHNHELVP 180 9*************************************999888555667889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-30	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-31	301	393	IPR018289	MULE transposase domain
Pfam	PF04434	8.7E-13	569	615	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	585	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-8	592	619	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MDNEVLEFDI GVGVSSGGDV DDDAIDIEHH AIDEDDMIDS PIAGISVGNA GFSANGVEGG 60 GNYFPERELL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWVVSGF VKEHNHELVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR 240 NNRQKSIEGE IQLLLDYLRQ MNAENSSFFY AVQGSEDQSV GNVFWADPKA RKDFTHFGDT 300 VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINEN EASFVWLFNT WHKAMSARAP 360 VSITTDHDAV ISAAIMQVFP ETRQRFCKWH IFKKCQEKLL HVFLKHPTFE ADFHKCVNLT 420 ESIEDFESCW LSLLDKYELR DNDWLQAIYS DRRQWVPVYI RDTFFAEMST TQRSDSMNSY 480 FDGYVNASTN LSQFFKLYEK ALESRREKEV KADYDTMNSP PVLKTPSPME KQASDLYTRK 540 LFMRFQEELV GTLTFMASRA GDDGDVITYQ VAKYGEDHRA HFVKFNVLEM RANCSCQMFE 600 FSGIICRHIL AVFRVTNVLT LPPHYILKRW TRNAKSSVIF DDYGSHAFAN YLESHTVRYN 660 TLRHKALQFV EDAANSVYTC DAAVVALQEA ATTVALAMKN EGRKTITNGH IVERLVADRN 720 QADNHGDHQM SEQSESEDDA DKKIQQLRNE LELATRKCEA YRANLLSVLK DMEDHKIQLS 780 IKVQNIKISL KDSL

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MDNEVLEFDI GVGVSSGGDV DDDAIDIEHH AIDEDDMIDS PIAGISVGNA GFSANGVEGG  60
GNYFPERELL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWVVSGF VKEHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRQKSIEGE IQLLLDYLRQ MNAENSSFFY AVQGSEDQSV GNVFWADPKA RKDFTHFGDT  300
VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINEN EASFVWLFNT WHKAMSARAP  360
VSITTDHDAV ISAAIMQVFP ETRQRFCKWH IFKKCQEKLL HVFLKHPTFE ADFHKCVNLT  420
ESIEDFESCW LSLLDKYELR DNDWLQAIYS DRRQWVPVYI RDTFFAEMST TQRSDSMNSY  480
FDGYVNASTN LSQFFKLYEK ALESRREKEV KADYDTMNSP PVLKTPSPME KQASDLYTRK  540
LFMRFQEELV GTLTFMASRA GDDGDVITYQ VAKYGEDHRA HFVKFNVLEM RANCSCQMFE  600
FSGIICRHIL AVFRVTNVLT LPPHYILKRW TRNAKSSVIF DDYGSHAFAN YLESHTVRYN  660
TLRHKALQFV EDAANSVYTC DAAVVALQEA ATTVALAMKN EGRKTITNGH IVERLVADRN  720
QADNHGDHQM SEQSESEDDA DKKIQQLRNE LELATRKCEA YRANLLSVLK DMEDHKIQLS  780
IKVQNIKISL KDSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555162.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555162.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4MD13	0.0	V4MD13_EUTSA; Uncharacterized protein
STRING	XP_010555162.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]